@article {2066, title = {In-Office Vitreous Biopsy With a Vitreous Cutter and Manual Actuation.}, journal = {Ophthalmic Surg Lasers Imaging Retina}, year = {2024}, month = {2024 Jan 01}, pages = {1-3}, abstract = {

In-office vitreous biopsy is currently performed with a 25-gauge needle or less frequently with a specialized in-office surgical system. This article demonstrates in-office vitreous biopsy with a standard vitreous cutter, using syringes to actuate the cutter. A 79-year-old woman presented six days after intravitreal bevacizumab with endophthalmitis. After subconjunctival anesthesia, a valved 27-gauge trocar was inserted through the pars plana. Two syringes were connected to a pneumatic 27-gauge Alcon vitrectomy handpiece and manually actuated by an assistant while the physician aspirated with a third syringe to obtain the vitreous biopsy. Intravitreal vancomycin and ceftazidime were injected. A total of 0.5 cc of fluid was collected without complications. Manual actuated vitrectomy reliably collects sufficient vitreous samples for diagnostic evaluation and may be safer and more effective than needle biopsy. .

}, issn = {2325-8179}, doi = {10.3928/23258160-20231206-04}, author = {DeBoer, Charles M T and Mahajan, Vinit B and Sanislo, Steven R} } @article {2070, title = {Liquid Biopsy Proteomics in Ophthalmology.}, journal = {J Proteome Res}, volume = {23}, year = {2024}, month = {2024 Feb 02}, pages = {511-522}, abstract = {

Minimally invasive liquid biopsies from the eye capture locally enriched fluids that contain thousands of proteins from highly specialized ocular cell types, presenting a promising alternative to solid tissue biopsies. The advantages of liquid biopsies include sampling the eye without causing irreversible functional damage, potentially better reflecting tissue heterogeneity, collecting samples in an outpatient setting, monitoring therapeutic response with sequential sampling, and even allowing examination of disease mechanisms at the cell level in living humans, an approach that we refer to as TEMPO (Tracing Expression of Multiple Protein Origins). Liquid biopsy proteomics has the potential to transform molecular diagnostics and prognostics and to assess disease mechanisms and personalized therapeutic strategies in individual patients. This review addresses opportunities, challenges, and future directions of high-resolution liquid biopsy proteomics in ophthalmology, with particular emphasis on the large-scale collection of high-quality samples, cutting edge proteomics technology, and artificial intelligence-supported data analysis.

}, keywords = {Artificial Intelligence, Biopsy, Humans, Liquid Biopsy, Ophthalmology, Proteins, Proteomics}, issn = {1535-3907}, doi = {10.1021/acs.jproteome.3c00756}, author = {Wolf, Julian and Franco, Joel A and Yip, Rui and Dabaja, Mohamed Ziad and Velez, Gabriel and Liu, Fei and Bassuk, Alexander G and Mruthyunjaya, Prithvi and Dufour, Antoine and Mahajan, Vinit B} } @article {2067, title = {Macular dystrophy in Kabuki syndrome due to de novo KMT2D variants: refining the phenotype with multimodal imaging and follow-up over 10 years: insight into pathophysiology.}, journal = {Graefes Arch Clin Exp Ophthalmol}, year = {2024}, month = {2024 Jan 11}, abstract = {

BACKGROUND: Kabuki Syndrome is a rare and genetically heterogenous condition with both ophthalmic and systemic complications and typical facial features. We detail the macular phenotype in two unrelated patients with Kabuki syndrome due to de novo nonsense variants in KMT2D, one novel. A follow-up of 10 years is reported. Pathogenicity of both de novo nonsense variants is analyzed.

METHODS: Four eyes of two young patients were studied by full clinical examination, kinetic perimetry, short wavelength autofluorescence, full field (ff) ERGs, and spectral-domain optical coherence tomography (SD-OCT). One patient had adaptive optic (AO) imaging. Whole exome sequencing was performed in both patients.

RESULTS: Both patients had de novo nonsense variants in KMTD2. One patient had c.14843C\>G; p. (Ser4948ter) novel variant and the second c.11119C\>T; p. (Arg3707ter). Both had a stable Snellen visual acuity of 0.2-0.3. The retinal multimodal imaging demonstrated abnormalities at the fovea in both eyes: hyperreflectivity to blue light and a well-delimited gap-disruption of ellipsoid and interdigitation layer on OCT. The dark area on AO imaging is presumed to be absent for, or with structural change to photoreceptors. The ff ERGs and kinetic visual fields were normal. The foveal findings remained stable over several years.

CONCLUSION: Kabuki syndrome-related maculopathy is a distinct loss of photoreceptors at the fovea as shown by multimodal imaging including, for the first time, AO imaging. This report adds to the literature of only one case with maculopathy with two additional macular dystrophies in patients with Kabuki syndrome. Although underestimated, these cases further raise awareness of the potential impact of retinal manifestations of Kabuki syndrome not only among ophthalmologists but also other healthcare professionals involved in the care of patients with this multisystem disorder.

}, issn = {1435-702X}, doi = {10.1007/s00417-023-06345-1}, author = {Vaclavik, Veronika and Navarro, Aurelie and Jacot-Guillarmod, Alain and Bottani, Armand and Sun, Young Joo and Franco, Joel A and Mahajan, Vinit B and Smirnov, Vasily and Bouvet-Drumare, Isabelle} } @article {2071, title = {A rare case of type II tri-allelic inheritance at vWA, SE33, D8S1179, and D13S317 loci demonstrated by STR analysis in paternity testing.}, journal = {Forensic Sci Med Pathol}, year = {2024}, month = {2024 Feb 06}, abstract = {

Short tandem repeat (STR) typing has been regularly used in paternity disputes and forensic human identification linked caseworks. Occasionally, forensic scientists come across aberrant allele patterns during STR typing because of mutations, genetic variations, and other abnormalities. The tri-allelic pattern of STR is rare, particularly, the case where this pattern exists at 4 loci. Here, we report the type II tri-allelic patterns observed at vWA, SE33, D8S1179, and D13S317 loci in the product of conception (POC) sample during the course of our regular paternity case investigation. The DNA extracted from the blood samples and tissue of POC were subjected to STR typing for autosomal and sex STR loci using the commercial QIAGEN\&$\#$39;s Investigator IDplex Plus Kit and QIAGEN\&$\#$39;s Investigator 24plex QS Kit. Capillary electrophoresis was carried out in 3500 and 3500xL Genetic Analyzer Applied Biosystems and genotyped using GeneMapper ID-X Software v1.5 and v1.6. In this case of paternity inclusion, the POC sample displayed type II tri-allelic patterns at vWA (16, 19, 20), SE33 (19, 28.2, 29.2), D13S317 (16, 19, 20), and D8S1179 (10, 13, 17) loci. In addition, the POC displayed an abnormal genotype with a heterozygous peak imbalance (type II-B) of (1:2) pattern at D3S1358, D21S11, and D16S539 loci, of (2:1) pattern at D1S1656, D12S391, D10S1248, D2S1338, D2S441, D18S317, FGA, CSF1PO, and D5S818 loci, and type II-C allelic pattern (one single peak with triplicate height) at D19S433 and DS7820 loci. Understanding of such anomalous genotypes improves the knowledge about tri-allelic pattern of CODIS loci and helps in the appropriate interpretation of the results in STR typing.

}, issn = {1556-2891}, doi = {10.1007/s12024-024-00792-w}, author = {Gavale, Kishor S and Mahajan, Vaishali B and Pande, Amulya A and Shinde, Apurva M and Thakare, Vijay J and Ghumatkar, Sangita V} } @article {2050, title = {AI-Human Hybrid Workflow Enhances Teleophthalmology for the Detection of Diabetic Retinopathy.}, journal = {Ophthalmol Sci}, volume = {3}, year = {2023}, month = {2023 Dec}, pages = {100330}, abstract = {

OBJECTIVE: Detection of diabetic retinopathy (DR) outside of specialized eye care settings is an important means of access to vision-preserving health maintenance. Remote interpretation of fundus photographs acquired in a primary care or other nonophthalmic setting in a store-and-forward manner is a predominant paradigm of teleophthalmology screening programs. Artificial intelligence (AI)-based image interpretation offers an alternative means of DR detection. IDx-DR (Digital Diagnostics Inc) is a Food and Drug Administration-authorized autonomous testing device for DR. We evaluated the diagnostic performance of IDx-DR compared with human-based teleophthalmology over 2 and a half years. Additionally, we evaluated an AI-human hybrid workflow that combines AI-system evaluation with human expert-based assessment for referable cases.

DESIGN: Prospective cohort study and retrospective analysis.

PARTICIPANTS: Diabetic patients \≥ 18 years old without a prior DR diagnosis or DR examination in the past year presenting for routine DR screening in a primary care clinic.

METHODS: Macula-centered and optic nerve-centered fundus photographs were evaluated by an AI algorithm followed by consensus-based overreading by retina specialists at the Stanford Ophthalmic Reading Center. Detection of more-than-mild diabetic retinopathy (MTMDR) was compared with in-person examination by a retina specialist.

MAIN OUTCOME MEASURES: Sensitivity, specificity, accuracy, positive predictive value, and gradability achieved by the AI algorithm and retina specialists.

RESULTS: The AI algorithm had higher sensitivity (95.5\% sensitivity; 95\% confidence interval [CI], 86.7\%-100\%) but lower specificity (60.3\% specificity; 95\% CI, 47.7\%-72.9\%) for detection of MTMDR compared with remote image interpretation by retina specialists (69.5\% sensitivity; 95\% CI, 50.7\%-88.3\%; 96.9\% specificity; 95\% CI, 93.5\%-100\%). Gradability of encounters was also lower for the AI algorithm (62.5\%) compared with retina specialists (93.1\%). A 2-step AI-human hybrid workflow in which the AI algorithm initially rendered an assessment followed by overread by a retina specialist of MTMDR-positive encounters resulted in a sensitivity of 95.5\% (95\% CI, 86.7\%-100\%) and a specificity of 98.2\% (95\% CI, 94.6\%-100\%). Similarly, a 2-step overread by retina specialists of AI-ungradable encounters improved gradability from 63.5\% to 95.6\% of encounters.

CONCLUSIONS: Implementation of an AI-human hybrid teleophthalmology workflow may both decrease reliance on human specialist effort and improve diagnostic accuracy.

FINANCIAL DISCLOSURES: Proprietary or commercial disclosure may be found after the references.

}, issn = {2666-9145}, doi = {10.1016/j.xops.2023.100330}, author = {Dow, Eliot R and Khan, Nergis C and Chen, Karen M and Mishra, Kapil and Perera, Chandrashan and Narala, Ramsudha and Basina, Marina and Dang, Jimmy and Kim, Michael and Levine, Marcie and Phadke, Anuradha and Tan, Marilyn and Weng, Kirsti and Do, Diana V and Moshfeghi, Darius M and Mahajan, Vinit B and Mruthyunjaya, Prithvi and Leng, Theodore and Myung, David} } @article {2069, title = {Artificial Intelligence Improves Patient Follow-Up in a Diabetic Retinopathy Screening Program.}, journal = {Clin Ophthalmol}, volume = {17}, year = {2023}, month = {2023}, pages = {3323-3330}, abstract = {

PURPOSE: We examine the rate of and reasons for follow-up in an Artificial Intelligence (AI)-based workflow for diabetic retinopathy (DR) screening relative to two human-based workflows.

PATIENTS AND METHODS: A DR screening program initiated September 2019 between one institution and its affiliated primary care and endocrinology clinics screened 2243 adult patients with type 1 or 2 diabetes without a diagnosis of DR in the previous year in the San Francisco Bay Area. For patients who screened positive for more-than-mild-DR (MTMDR), rates of follow-up were calculated under a store-and-forward human-based DR workflow (\"Human Workflow\"), an AI-based workflow involving IDx-DR (\"AI Workflow\"), and a two-step hybrid workflow (\"AI-Human Hybrid Workflow\"). The AI Workflow provided results within 48 hours, whereas the other workflows took up to 7 days. Patients were surveyed by phone about follow-up decisions.

RESULTS: Under the AI Workflow, 279 patients screened positive for MTMDR. Of these, 69.2\% followed up with an ophthalmologist within 90 days. Altogether 70.5\% (=48) of patients who followed up chose their location based on primary care referral. Among the subset of patients that were seen in person at the university eye institute under the Human Workflow and AI-Human Hybrid Workflow, 12.0\% (=14/117) and 11.7\% (=12/103) of patients with a referrable screening result followed up compared to 35.5\% of patients under the AI Workflow (=99/279; = 36.70, \< 0.00000001).

CONCLUSION: Ophthalmology follow-up after a positive DR screening result is approximately three-fold higher under the AI Workflow than either the Human Workflow or AI-Human Hybrid Workflow. Improved follow-up behavior may be due to the decreased time to screening result.

}, issn = {1177-5467}, doi = {10.2147/OPTH.S422513}, author = {Dow, Eliot R and Chen, Karen M and Zhao, Cindy S and Knapp, Austen N and Phadke, Anuradha and Weng, Kirsti and Do, Diana V and Mahajan, Vinit B and Mruthyunjaya, Prithvi and Leng, Theodore and Myung, David} } @article {2052, title = {Autosomal dominant neovascular inflammatory vitreoretinopathy with CAPN5 c.731T > C gene mutation; clinical management of a family cohort and review of the literature.}, journal = {Ophthalmic Genet}, year = {2023}, month = {2023 Oct 02}, pages = {1-9}, abstract = {

BACKGROUND: To report a cohort of patients with clinically and genetically diagnosed autosomal dominant neovascular inflammatory vitreoretinopathy (ADNIV) and showcase the spectrum of the disease utilizing multimodal imaging and genetic testing. Additionally, the utility of multimodal imaging in guiding treatment will also be illustrated.

MATERIALS/METHODS: Five patients from a single-family pedigree in Ohio with clinical signs of ADNIV were evaluated. Medical history, family history, and complete ocular examinations were obtained during regular clinic visits. Multimodal imaging including ocular coherence tomography, fluorescein angiography, wide-field fundus photographs, and Humphrey visual field testing was obtained for all five patients. Additionally, genetic testing for the () gene was conducted on all patients.

RESULTS: All five patients were noted to have a c.731T \> C (p.L244P) mutation on genetic testing. Using multimodal imaging to supplement the clinical examination, pathologic changes such as retinal vascular inflammation, macular edema, and tractional retinal membranes were well illustrated and monitored over time. This allowed for earlier intervention when appropriate such as with intraocular steroid or systemic anti-inflammatory treatments.

CONCLUSION: Phenotypic presentation varied among patients in this series, but is consistent with the spectrum of pathologic changes previously described in patients with other CAPN5 gene mutations. Monitoring of patients with ADNIV utilizing multimodal imaging can help better assess progression of this disease and guide treatment decisions. Additionally, increased genetic testing in patients with inherited retinal diseases may reveal novel gene mutations that could serve as potential targets for future genetic treatment regimens.

}, issn = {1744-5094}, doi = {10.1080/13816810.2023.2255257}, author = {Tabbaa, Tarek and Mehra, Ankur A and Kesav, Natasha P and Mahajan, Vinit B and Swanson, Roy D and Zubricky, Ryan and Sobol, Warren M} } @article {2048, title = {Biobanking of Human Aqueous and Vitreous Liquid Biopsies for Molecular Analyses.}, journal = {J Vis Exp}, year = {2023}, month = {2023 Sep 11}, abstract = {

A critical challenge in translational research is establishing a viable and efficient interface between patient care in the operating room (OR) and the research laboratory. Here, we developed a protocol for acquiring high-quality liquid biopsies for molecular analyses from the aqueous humor and the vitreous from patients undergoing eye surgery. In this workflow, a Mobile Operating Room Lab Interface (MORLI) cart equipped with a computer, a barcode scanner, and lab instruments, including onboard cold storage, is used to obtain and archive human biological samples. A web-based data privacy-compliant database enables annotating each sample over its lifetime, and a cartesian coordinate system allows tracking each barcoded specimen in storage, enabling quick and accurate retrieval of samples for downstream analyses. Molecular characterization of human tissue samples not only serves as a diagnostic tool (e.g., to distinguish between infectious endophthalmitis and other non-infectious intraocular inflammation) but also represents an important component of translational research, allowing the identification of new drug targets, development of new diagnostic tools, and personalized therapeutics.

}, issn = {1940-087X}, doi = {10.3791/65804}, author = {Wolf, Julian and Chemudupati, Teja and Kumar, Aarushi and Rasmussen, Ditte K and Wai, Karen M and Chang, Robert T and Montague, Artis A and Tang, Peter H and Bassuk, Alexander G and Dufour, Antoine and Mruthrunjaya, Prithvi and Mahajan, Vinit B} } @article {2051, title = {Cilia-associated wound repair mediated by IFT88 in retinal pigment epithelium.}, journal = {Sci Rep}, volume = {13}, year = {2023}, month = {2023 May 21}, pages = {8205}, abstract = {

Primary cilia are conserved organelles that integrate extracellular cues into intracellular signals and are critical for diverse processes, including cellular development and repair responses. Deficits in ciliary function cause multisystemic human diseases known as ciliopathies. In the eye, atrophy of the retinal pigment epithelium (RPE) is a common feature of many ciliopathies. However, the roles of RPE cilia in vivo remain poorly understood. In this study, we first found that mouse RPE cells only transiently form primary cilia. We then examined the RPE in the mouse model of Bardet-Biedl Syndrome 4 (BBS4), a ciliopathy associated with retinal degeneration in humans, and found that ciliation in BBS4 mutant RPE cells is disrupted early during development. Next, using a laser-induced injury model in vivo, we found that primary cilia in RPE reassemble in response to laser injury during RPE wound healing and then rapidly disassemble after the repair is completed. Finally, we demonstrated that RPE-specific depletion of primary cilia in a conditional mouse model of cilia loss promoted wound healing and enhanced cell proliferation. In summary, our data suggest that RPE cilia contribute to both retinal development and repair and provide insights into potential therapeutic targets for more common RPE degenerative diseases.

}, keywords = {Animals, Cilia, Ciliopathies, Disease Models, Animal, Humans, Mice, Microtubule-Associated Proteins, Retinal Degeneration, Retinal Pigment Epithelium, Tumor Suppressor Proteins}, issn = {2045-2322}, doi = {10.1038/s41598-023-35099-3}, author = {Ning, Ke and Bhuckory, Mohajeet B and Lo, Chien-Hui and Sendayen, Brent E and Kowal, Tia J and Chen, Ming and Bansal, Ruchi and Chang, Kun-Che and Vollrath, Douglas and Berbari, Nicolas F and Mahajan, Vinit B and Hu, Yang and Sun, Yang} } @article {2068, title = {Cross-Platform Identification and Validation of Uveal Melanoma Vitreous Protein Biomarkers.}, journal = {Invest Ophthalmol Vis Sci}, volume = {64}, year = {2023}, month = {2023 Nov 01}, pages = {14}, abstract = {

PURPOSE: The purpose of this study was to profile protein expression liquid vitreous biopsies from patients with uveal melanoma (UM) using mass spectrometry to identify prognostic biomarkers, signaling pathways, and therapeutic targets.

METHODS: Vitreous biopsies were collected from two cohorts in a pilot study: comparative control eyes with epiretinal membranes (ERM; n = 3) and test eyes with UM (n = 8). Samples were analyzed using liquid chromatography-tandem mass spectrometry (LC-MS/MS). Identified proteins were compared to data from a targeted multiplex ELISA proteomics platform.

RESULTS: A total of 69 significantly elevated proteins were detected in the UM vitreous, including LYVE-1. LC-MS/MS identified 62 significantly upregulated proteins in UM vitreous that were not previously identified by ELISA. Analysis of differential protein expression by tumor molecular classification (gene expression profiling [GEP] and preferentially expressed antigen in melanoma [PRAME]) further identified proteins that correlated with these classifications. Patients with high-risk GEP tumors displayed elevated vitreous expression of HGFR (fold-change [FC] = 2.66E\ +\ 03, P value = 0.003) and PYGL (FC = 1.02E\ +\ 04, P = 1.72E-08). Patients with PRAME positive tumors displayed elevated vitreous expression of ENPP-2 (FC = 3.21, P = 0.04), NEO1 (FC = 2.65E\ +\ 03, P = 0.002), and LRP1 (FC = 5.59E\ +\ 02, P value = 0.01). IGF regulatory effectors were highly represented (P value = 1.74E-16). Cross-platform analysis validated seven proteins identified by ELISA and LC-MS/MS.

CONCLUSIONS: Proteomic analysis of liquid biopsies may provide prognostic information supporting gene expression of tumor biopsies. The use of multiple protein detection platforms in the same patient samples increases the sensitivity of candidate biomarker detection and allows for precise characterization of the vitreous proteome.

}, keywords = {Antigens, Neoplasm, Biomarkers, Chromatography, Liquid, Humans, Melanoma, Pilot Projects, Proteomics, Tandem Mass Spectrometry, Uveal Neoplasms}, issn = {1552-5783}, doi = {10.1167/iovs.64.14.14}, author = {Velez, Gabriel and Wolf, Julian and Dufour, Antoine and Mruthyunjaya, Prithvi and Mahajan, Vinit B} } @article {2042, title = {Hardwiring tissue-specific AAV transduction in mice through engineered receptor expression.}, journal = {Nat Methods}, volume = {20}, year = {2023}, month = {2023 Jul}, pages = {1070-1081}, abstract = {

The development of transgenic mouse models that express genes of interest in specific cell types has transformed our understanding of basic biology and disease. However, generating these models is time- and resource-intensive. Here we describe a model system, SELective Expression and Controlled Transduction In Vivo (SELECTIV), that enables efficient and specific expression of transgenes by coupling adeno-associated virus (AAV) vectors with Cre-inducible overexpression of the multi-serotype AAV receptor, AAVR. We demonstrate that transgenic AAVR overexpression greatly increases the efficiency of transduction of many diverse cell types, including muscle stem cells, which are normally refractory to AAV transduction. Superior specificity is achieved by combining Cre-mediated AAVR overexpression with whole-body knockout of endogenous Aavr, which is demonstrated in heart cardiomyocytes, liver hepatocytes and cholinergic neurons. The enhanced efficacy and exquisite specificity of SELECTIV has broad utility in development of new mouse model systems and expands the use of AAV for gene delivery in vivo.

}, keywords = {Animals, Dependovirus, Gene Transfer Techniques, Genetic Therapy, Genetic Vectors, Mice, Mice, Transgenic, Transduction, Genetic, Transgenes}, issn = {1548-7105}, doi = {10.1038/s41592-023-01896-x}, author = {Zengel, James and Wang, Yu Xin and Seo, Jai Woong and Ning, Ke and Hamilton, James N and Wu, Bo and Raie, Marina and Holbrook, Colin and Su, Shiqi and Clements, Derek R and Pillay, Sirika and Puschnik, Andreas S and Winslow, Monte M and Idoyaga, Juliana and Nagamine, Claude M and Sun, Yang and Mahajan, Vinit B and Ferrara, Katherine W and Blau, Helen M and Carette, Jan E} } @article {2037, title = {Intraoperative Complications With Vitreous Biopsy for Molecular Proteomics.}, journal = {Ophthalmic Surg Lasers Imaging Retina}, volume = {54}, year = {2023}, month = {2023 Jan}, pages = {32-36}, abstract = {

OBJECTIVE: To study the incidence of intraoperative complications while collecting a vitreous sample for proteomic biomarker analyses during small-gauge pars plana vitrectomy (PPV).

METHODS: A retrospective case series was assembled from the surgical logs and charts of patients who underwent 23-, 25-, and 27-gauge PPV along with an undiluted vitreous biopsy. Primary surgical indication and detailed operative reports were reviewed. Complications specific to vitreous biopsy were assessed while complications related to vitrectomy in general without biopsy were not tabulated.

RESULTS: In 1190 eyes that underwent vitreous biopsy, the most common indications for PPV were rhegmatogenous retinal detachment (24.2\%), epiretinal membrane (ERM) (21.7\%), vitreous hemorrhage (11.0\%), uveitis (8.3\%), and macular hole (7.5\%). An adequate sample of 0.5 cc to 1.0 cc was obtained in all cases. There was one sclerotomy break associated with biopsy, but no instances of lens touch, retinal contusion, retinal detachment, or intraocular hemorrhage.

CONCLUSIONS: Undiluted vitreous biopsy obtained at the time of small-gauge vitrectomy is a generally safe procedure and may be considered for collection of samples for proteomic analysis. .

}, keywords = {Biopsy, Humans, Intraoperative Complications, Postoperative Complications, Proteomics, Retinal Detachment, Retrospective Studies, Vitrectomy}, issn = {2325-8179}, doi = {10.3928/23258160-20221214-02}, author = {Mishra, Kapil and Velez, Gabriel and Chemudupati, Teja and Tang, Peter H and Mruthyunjaya, Prithvi and Sanislo, Steven R and Mahajan, Vinit B} } @article {2058, title = {Liquid-biopsy proteomics combined with AI identifies cellular drivers of eye aging and disease in~vivo.}, journal = {Cell}, volume = {186}, year = {2023}, month = {2023 Oct 26}, pages = {4868-4884.e12}, abstract = {

Single-cell analysis in living humans is essential for understanding disease mechanisms, but it is impractical in non-regenerative organs, such as the eye and brain, because tissue biopsies would cause serious damage. We resolve this problem by integrating proteomics of liquid biopsies with single-cell transcriptomics from all known ocular cell types to trace the cellular origin of 5,953 proteins detected in the aqueous humor. We identified hundreds of cell-specific protein markers, including for individual retinal cell types. Surprisingly, our results reveal that retinal degeneration occurs in Parkinson\&$\#$39;s disease, and the cells driving diabetic retinopathy switch with disease stage. Finally, we developed artificial intelligence (AI) models to assess individual cellular aging and found that many eye diseases not associated with chronological age undergo accelerated molecular aging of disease-specific cell types. Our approach, which can be applied to other organ systems, has the potential to transform molecular diagnostics and prognostics while uncovering new cellular disease and aging mechanisms.

}, keywords = {Aging, Artificial Intelligence, Biopsy, Humans, Liquid Biopsy, Proteomics}, issn = {1097-4172}, doi = {10.1016/j.cell.2023.09.012}, author = {Wolf, Julian and Rasmussen, Ditte K and Sun, Young Joo and Vu, Jennifer T and Wang, Elena and Espinosa, Camilo and Bigini, Fabio and Chang, Robert T and Montague, Artis A and Tang, Peter H and Mruthyunjaya, Prithvi and Aghaeepour, Nima and Dufour, Antoine and Bassuk, Alexander G and Mahajan, Vinit B} } @article {2049, title = {Unleashing the potential of CRISPR multiplexing: Harnessing Cas12 and Cas13 for precise gene modulation in eye diseases.}, journal = {Vision Res}, volume = {213}, year = {2023}, month = {2023 Sep 16}, pages = {108317}, abstract = {

Gene therapy is a flourishing field with the potential to revolutionize the treatment of genetic diseases. The emergence of CRISPR-Cas9 has significantly advanced targeted and efficient genome editing. Although CRISPR-Cas9 has demonstrated promising potential applications in various genetic disorders, it faces limitations in simultaneously targeting multiple genes. Novel CRISPR systems, such as Cas12 and Cas13, have been developed to overcome these challenges, enabling multiplexing and providing unique advantages. Cas13, in particular, targets mRNA instead of genomic DNA, permitting precise gene expression control and mitigating off-target effects. This review investigates the potential of Cas12 and Cas13 in ocular gene therapy applications, such as suppression of inflammation and cell death. In addition, the capabilities of Cas12 and Cas13 are explored in addressing potential targets related with disease mechanisms such as aberrant isoforms, mitochondrial genes, cis-regulatory sequences, modifier genes, and long non-coding RNAs. Anatomical accessibility and relative immune privilege of the eye provide an ideal organ system for evaluating these novel techniques\&$\#$39; efficacy and safety. By targeting multiple genes concurrently, CRISPR-Cas12 and Cas13 systems hold promise for treating a range of ocular disorders, including glaucoma, retinal dystrophies, and age-related macular degeneration. Nonetheless, additional refinement is required to ascertain the safety and efficacy of these approaches in ocular disease treatments. Thus, the development of Cas12 and Cas13 systems marks a significant advancement in gene therapy, offering the potential to devise effective treatments for ocular disorders.

}, issn = {1878-5646}, doi = {10.1016/j.visres.2023.108317}, author = {Bigini, Fabio and Lee, Soo Hyeon and Sun, Young Joo and Sun, Yang and Mahajan, Vinit B} } @article {1926, title = {Author Correction: Investigation of Cas9 antibodies in the human eye.}, journal = {Nat Commun}, volume = {13}, year = {2022}, month = {2022 Apr 12}, pages = {2109}, issn = {2041-1723}, doi = {10.1038/s41467-022-29844-x}, author = {Toral, Marcus A and Charlesworth, Carsten T and Ng, Benjamin and Chemudupati, Teja and Homma, Shota and Nakauchi, Hiromitsu and Bassuk, Alexander G and Porteus, Matthew H and Mahajan, Vinit B} } @article {2018, title = {Bacillary Layer Detachment after Photodynamic Therapy.}, journal = {Ophthalmol Retina}, volume = {6}, year = {2022}, month = {2022 06}, pages = {500}, keywords = {Fluorescein Angiography, Humans, Photochemotherapy, Verteporfin}, issn = {2468-6530}, doi = {10.1016/j.oret.2022.02.012}, author = {Mishra, Kapil and Mahajan, Vinit B} } @article {2019, title = {Calpains as mechanistic drivers and therapeutic targets for ocular disease.}, journal = {Trends Mol Med}, volume = {28}, year = {2022}, month = {2022 08}, pages = {644-661}, abstract = {

Ophthalmic neurodegenerative diseases encompass a wide array of molecular pathologies unified by calpain dysregulation. Calpains are calcium-dependent proteases that perpetuate cellular death and inflammation when hyperactivated. Calpain inhibition trials in other organs have faced pharmacological challenges, but the eye offers many advantages for the development and testing of targeted molecular therapeutics, including small molecules, peptides, engineered proteins, drug implants, and gene-based therapies. This review highlights structural mechanisms underlying calpain activation, distinct cellular expression patterns, and in vivo models that link calpain hyperactivity to human retinal and developmental disease. Optimizing therapeutic approaches for calpain-mediated eye diseases can help accelerate clinically feasible strategies for treating calpain dysregulation in other diseased tissues.

}, keywords = {Calcium, Calpain, Cell Death, Humans, Retina}, issn = {1471-499X}, doi = {10.1016/j.molmed.2022.05.007}, author = {Vu, Jennifer T and Wang, Elena and Wu, Jolan and Sun, Young Joo and Velez, Gabriel and Bassuk, Alexander G and Lee, Soo Hyeon and Mahajan, Vinit B} } @article {2043, title = {Chorioretinal atrophy following voretigene neparvovec despite the presence of fundus autofluorescence.}, journal = {Mol Genet Genomic Med}, volume = {10}, year = {2022}, month = {2022 Nov}, pages = {e2038}, abstract = {

INTRODUCTION: Leber congenital amaurosis (LCA) type 2, due to disease-causing variants in RPE65, is characterized by severe visual loss in early infancy. Current treatments include voretigene neparvovec-rzyl (VN) for RPE65-associated LCA. Herein, we present the long-term follow-up of a patient treated with VN using quantitative autofluorescence (488\ nm excitation).

CASE REPORT: A 9-year-old girl with a diagnosis of LCA with biallelic variants in RPE65 presented for evaluation. The patient underwent VN treatment at the age of 11. The patient returned to clinic at age of 19 at which time imaging revealed evidence of chorioretinal atrophy. Quantitative autofluorescence performed prior to gene therapy and at 6- and 8-year follow-up revealed a central area of fundus autofluorescence.

DISCUSSION: This case report demonstrates acquisition of fundus autofluorescence at 6- and 8-year follow-up despite the development of chorioretinal atrophy.

}, keywords = {Atrophy, Child, cis-trans-Isomerases, Female, Humans, Leber Congenital Amaurosis, Mutation, Retinal Degeneration}, issn = {2324-9269}, doi = {10.1002/mgg3.2038}, author = {Kolesnikova, Masha and Lima de Carvalho, Jose Ronaldo and Parmann, Rait and Kim, Angela H and Mahajan, Vinit B and Tsang, Stephen H and Sparrow, Janet R} } @article {2024, title = {Clinical characteristics of high myopia in female carriers of pathogenic mutations: a case series and review of the literature.}, journal = {Ophthalmic Genet}, year = {2022}, month = {2022 Aug 26}, pages = {1-9}, abstract = {

BACKGROUND: RPGR mutations are the most common cause of X-linked retinitis pigmentosa (XLRP). High myopia has been described as a very frequent feature among affected female carriers of XLRP. However, the clinical phenotype of female patients presenting with X-linked RPGR-related high myopia has not been well described.

MATERIALS AND METHODS: Retrospective case series of four female patients with RPGR mutations and a diagnosis of high myopia, who presented to two academic eye centers. Clinical data, including age, family history, visual acuity, refractive error, dilated fundus exam, fundus photography, optical coherence tomography, electroretinography, and results of genetic testing, were collected.

RESULTS: Three RPGR variants identified in the present study have not been previously associated with myopia in female carriers. One variant (c.2405_2406delAG, p.Glu802Glyfs *32) has been previously associated with a myopic phenotype in a female patient. Patients became symptomatic between the first and sixth decades of life. Myopia-associated tilted optic discs and posterior staphyloma were present in all patients. Two patients presented with intraretinal migration of the retinal pigment epithelium.

CONCLUSION: RPGR-related high myopia has been associated with mutations in exons 1-14 and ORF15 in heterozygous females. There is a wide range of visual function among carriers. Although the exact mechanism of RPGR-related high myopia is still unclear, continued molecular diagnosis and description of phenotypes remain a crucial step in understanding the impact of RPGR mutations on visual function in female XLRP carriers.

}, issn = {1744-5094}, doi = {10.1080/13816810.2022.2113544}, author = {Tran, Matthew and Kolesnikova, Masha and Kim, Angela H and Kowal, Tia and Ning, Ke and Mahajan, Vinit B and Tsang, Stephen H and Sun, Yang} } @article {2044, title = {Conjunctival Swabs Reveal Higher Detection Rate Compared to Schirmer Strips for SARS-CoV-2 RNA Detection in Tears of Hospitalized COVID-19 Patients.}, journal = {J Clin Med}, volume = {11}, year = {2022}, month = {2022 Nov 24}, abstract = {

Purpose: To determine the prevalence of SARS-CoV-2 in tear samples and to investigate whether it correlates with ocular findings and patients\’ prognosis in Brazil. Methods: Tears were collected using Schirmer strips (SS) and conjunctival swabs (CS) from patients hospitalized with laboratory-confirmed SARS-CoV-2 infection. Samples were analyzed using qRT-PCR. Demographic and clinical data, ocular symptoms, and Schirmer tests (ST) were collected from patients. Charlson Comorbidity Index (CCI) was used to rate comorbidities, and patients were monitored until hospital discharge or death. Results: There were 61 hospitalized patients, 33 of which were diagnosed with COVID-19. Within the confirmed COVID-19 patients, SARS-CoV-2 was detected in 18.2\% (n = 6) of CS and 12.1\% (n = 4) of SS samples. Subjective and objective parameters for dry eye syndrome (e.g., ST COVID-19: 8.3 \± 6.4mm, non-COVID-19: 8.9 \± 6.6mm, p \> 0.05) were comparable between COVID-19 (n = 33) and non-COVID-19 patients (n = 28). Among the 16 COVID-19 patients exhibiting ocular symptoms, only tearing was reported significantly more frequently when tear samples were positive for SARS-CoV-2 (p \< 0.05). Strikingly, patients whose tears tested positive for SARS-CoV-2 had significantly inferior CCI (pos.: 34.0 \± 31.8\%, neg.: 67.6 \± 36.4\%, p \< 0.05) and higher mortality rates (pos.: 50.0\%, neg.: 7.4\%, p \< 0.01). Conclusions: SARS-CoV-2 was detected with a prevalence of 18.2\% on the ocular surface. Decreased CCI and increased mortality rate in the positive tear group suggests that viral detection may relate to prognosis and highlight the need of personal protective measures for healthcare professionals. Most of the patients, regardless of COVID-19 diagnosis, had low tear production and eye discomfort, possibly pointing to the need for artificial tear use during hospitalization.

}, issn = {2077-0383}, doi = {10.3390/jcm11236929}, author = {Sabage, Lu{\'\i}s Expedito and Sun, Young Joo and Wolf, Julian and Sabage, Josmar and Mazzo, Alessandra and Santos, Carlos Ferreira and Mahajan, Vinit B and Manzoni Louren{\c c}one, Luiz Fernando} } @article {2020, title = {Expanding the phenotype of TTLL5-associated retinal dystrophy: a case series.}, journal = {Orphanet J Rare Dis}, volume = {17}, year = {2022}, month = {2022 04 01}, pages = {146}, abstract = {

BACKGROUND: Inherited retinal dystrophies describe a heterogeneous group of retinal diseases that lead to the irreversible degeneration of rod and cone photoreceptors and eventual blindness. Recessive loss-of-function mutations in Tubulin Tyrosine Ligase Like 5 (TTLL5) represent a recently described cause of inherited cone-rod and cone dystrophy. This study describes the unusual phenotypes of three patients with autosomal recessive mutations in TTLL5. Examination of these patients included funduscopic evaluation, spectral-domain optical coherence tomography, short-wavelength autofluorescence, and full-field electroretinography (ffERG). Genetic diagnoses were confirmed using whole exome capture. Protein modeling of the identified variants was performed to explore potential genotype-phenotype correlations.

RESULTS: Genetic testing revealed five novel variants in TTLL5 in three unrelated patients with retinal dystrophy. Clinical imaging demonstrated features of sectoral cone-rod dystrophy and cone dystrophy, with phenotypic variability seen across all three patients. One patient also developed high-frequency hearing loss during a similar time period as the onset of retinal disease, potentially suggestive of a syndromic disorder. Retinal structure findings were corroborated with functional measures including ffERG findings that supported these diagnoses. Modeling of the five variants suggest that they cause different effects on protein function, providing a potential reason for genotype-phenotype correlation in these patients.

CONCLUSIONS: The authors report retinal phenotypic findings in three unrelated patients with novel mutations causing autosomal recessive TTLL5-mediated retinal dystrophy. These findings broaden the understanding of the phenotypes associated with TTLL5-mediated retinal disease and suggest that mutations in TTLL5 should be considered as a potential cause of sectoral retinal dystrophy in addition to cone-rod and cone dystrophies.

}, keywords = {Carrier Proteins, Electroretinography, Genetic Association Studies, Humans, Mutation, Phenotype, Retinal Dystrophies}, issn = {1750-1172}, doi = {10.1186/s13023-022-02295-9}, author = {Oh, Jin Kyun and Vargas Del Valle, Jos{\'e} G and Lima de Carvalho, Jose Ronaldo and Sun, Young Joo and Levi, Sarah R and Ryu, Joseph and Yang, Jing and Nagasaki, Takayuki and Emanuelli, Andres and Rasool, Nailyn and Allikmets, Rando and Sparrow, Janet R and Izquierdo, Natalio J and Duncan, Jacque L and Mahajan, Vinit B and Tsang, Stephen H} } @article {1896, title = {Investigation of Cas9 antibodies in the human eye.}, journal = {Nat Commun}, volume = {13}, year = {2022}, month = {2022 02 25}, pages = {1053}, abstract = {

Preexisting immunity against Cas9 proteins in humans represents a safety risk for CRISPR-Cas9 technologies. However, it is unclear to what extent preexisting Cas9 immunity is relevant to the eye as it is targeted for early in vivo CRISPR-Cas9 clinical trials. While the eye lacks T-cells, it contains antibodies, cytokines, and resident immune cells. Although precise mechanisms are unclear, intraocular inflammation remains a major cause of vision loss. Here, we used immunoglobulin isotyping and ELISA platforms to profile antibodies in serum and vitreous fluid biopsies from human adult subjects and Cas9-immunized mice. We observed high prevalence of preexisting Cas9-reactive antibodies in serum but not in the eye. However, we detected intraocular antibodies reactive to S. pyogenes-derived Cas9 after S. pyogenes intraocular infection. Our data suggest that serum antibody concentration may determine whether specific intraocular antibodies develop, but preexisting immunity to Cas9 may represent a lower risk in human eyes than systemically.

}, keywords = {Animals, Antibodies, CRISPR-Associated Protein 9, CRISPR-Cas Systems, Humans, Mice, Streptococcus pyogenes, T-Lymphocytes}, issn = {2041-1723}, doi = {10.1038/s41467-022-28674-1}, author = {Toral, Marcus A and Charlesworth, Carsten T and Ng, Benjamin and Chemudupati, Teja and Homma, Shota and Nakauchi, Hiromitsu and Bassuk, Alexander G and Porteus, Matthew H and Mahajan, Vinit B} } @article {2025, title = {Multimodal imaging reveals retinoschisis masquerading as retinal detachment in patients with choroideremia.}, journal = {Am J Ophthalmol Case Rep}, volume = {26}, year = {2022}, month = {2022 Jun}, pages = {101543}, abstract = {

Purpose: To report three cases of retinoschisis in patients with intermediate to advanced choroideremia.

Observations: Three patients were referred for evaluation of retinal detachment in the context of an inherited retinal degenerative disease. In all three cases, patients carried variants in the gene suspected to be pathogenic and exhibited the characteristic findings of choroideremia, including pigment clumping and chorioretinal atrophy with scleral exposure and prominent choroidal vessels. Interestingly, these patients were also found to have areas of typical retinoschisis and cystoid degeneration located in the outer plexiform layer of the mid periphery or macula. Retinoschisis was confirmed by spectral domain optical coherence tomography (SD-OCT).

Conclusions/Importance: This paper draws attention to the occurrence of retinoschisis in patients with choroideremia. OCT can be used to confirm the presence of retinoschisis rather than retinal detachment, as the clinical exam findings that distinguish the two conditions are not helpful in the setting of advanced chorioretinal atrophy. Although it remains unclear whether patients with choroideremia as a group are at increased risk of retinoschisis, it is possible that abnormal vesicular traffic in the RPE and photoreceptors could contribute to abnormalities in cell adhesion and the extracellular matrix. As gene therapy by subretinal injection of adeno-associated virus becomes the standard of care to slow down or arrest retinal degeneration in choroideremia, it will be critical to carefully screen these patients for retinoschisis prior to surgical intervention and to incorporate any such findings into surgical planning.

}, issn = {2451-9936}, doi = {10.1016/j.ajoc.2022.101543}, author = {Greig, Luciano C and Gutierrez, Karen G and Oh, Jin Kyun and Levi, Sarah R and Korot, Edward and Tsang, Stephen H and Mahajan, Vinit B} } @article {1921, title = {New COL6A6 Variant Causes Autosomal Dominant Retinitis Pigmentosa in a Four-Generation Family.}, journal = {Invest Ophthalmol Vis Sci}, volume = {63}, year = {2022}, month = {2022 Mar 02}, pages = {23}, abstract = {

Purpose: To report that variants in the gene for a large lamina basal component protein, COL6A6 (collagen type VI alpha 6 chain, Col6α6), linked to chromosome 3p22.1 causes retinitis pigmentosa (RP) in patients with autosomal dominant transmission (adRP).

Methods: A positional-cloning approach, whole exome sequencing, and modeling were used. The proband and several affected family members have been phenotyped and followed for over 12 years.

Results: A heterozygous missense variant, c.509C\>G (p. Ser170Cys) in exon 2 of COL6A6 (comprised of 36 exons and 2236 amino acids), was observed in a four- generation family and is likely to cause the adRP phenotype. It was identified in 10 affected members. All affected family members had a distinct phenotype: late-onset rod cone dystrophy, with good retained visual acuity, until their late 70s. Immunohistochemistry of human retina showed a dot-like signal at the base of the inner segments of photoreceptors and outer plexiform layer (OPL). The structural modeling of the N7 domain of Col6α6 suggests that the mutant might result in the abnormal cellular localization of collagen VI or malformation of collagen fibers resulting in the loss of its unique filament structure.

Conclusions: COL6A6 is widely expressed in human tissues and evolutionary conserved. It is thought to interact with a range of extracellular matrix components. Our findings suggest that this form of RP has long-term useful central visual acuity and a mild progression, which are important considerations for patient counseling.

}, keywords = {Collagen Type VI, Cone-Rod Dystrophies, Exons, Humans, Mutation, Missense, Pedigree, Retinitis Pigmentosa}, issn = {1552-5783}, doi = {10.1167/iovs.63.3.23}, author = {Vaclavik, Veronika and Tiab, Leila and Sun, Young Joo and Mahajan, Vinit B and Moulin, Alexandre and Allaman-Pillet, Nathalie and Munier, Francis L and Schorderet, Daniel F} } @article {2026, title = {Predicting Systemic Health Features from Retinal Fundus Images Using Transfer-Learning-Based Artificial Intelligence Models.}, journal = {Diagnostics (Basel)}, volume = {12}, year = {2022}, month = {2022 Jul 14}, abstract = {

While color fundus photos are used in routine clinical practice to diagnose ophthalmic conditions, evidence suggests that ocular imaging contains valuable information regarding the systemic health features of patients. These features can be identified through computer vision techniques including deep learning (DL) artificial intelligence (AI) models. We aim to construct a DL model that can predict systemic features from fundus images and to determine the optimal method of model construction for this task. Data were collected from a cohort of patients undergoing diabetic retinopathy screening between March 2020 and March 2021. Two models were created for each of 12 systemic health features based on the DenseNet201 architecture: one utilizing transfer learning with images from ImageNet and another from 35,126 fundus images. Here, 1277 fundus images were used to train the AI models. Area under the receiver operating characteristics curve (AUROC) scores were used to compare the model performance. Models utilizing the ImageNet transfer learning data were superior to those using retinal images for transfer learning (mean AUROC 0.78 vs. 0.65, -value \< 0.001). Models using ImageNet pretraining were able to predict systemic features including ethnicity (AUROC 0.93), age \> 70 (AUROC 0.90), gender (AUROC 0.85), ACE inhibitor (AUROC 0.82), and ARB medication use (AUROC 0.78). We conclude that fundus images contain valuable information about the systemic characteristics of a patient. To optimize DL model performance, we recommend that even domain specific models consider using transfer learning from more generalized image sets to improve accuracy.

}, issn = {2075-4418}, doi = {10.3390/diagnostics12071714}, author = {Khan, Nergis C and Perera, Chandrashan and Dow, Eliot R and Chen, Karen M and Mahajan, Vinit B and Mruthyunjaya, Prithvi and Do, Diana V and Leng, Theodore and Myung, David} } @article {2028, title = {Proteomic analysis of autoimmune retinopathy implicates NrCAM as a potential biomarker.}, journal = {Ophthalmol Sci}, volume = {2}, year = {2022}, month = {2022 Jun}, abstract = {

Purpose: To identify vitreous molecular biomarkers associated with autoimmune retinopathy (AIR).

Design: Case-control study.

Participants: We analyzed six eyes from four patients diagnosed with AIR and eight comparative controls diagnosed with idiopathic macular holes and epiretinal membranes.

Methods: Vitreous biopsies were collected from the participants and analyzed using liquid chromatography-tandem mass spectrometry (LC-MS/MS) or multiplex ELISA.

Outcome Measures: Protein expression changes were evaluated by 1-way ANOVA (significant p-value \<0.05), hierarchical clustering, and pathway analysis to identify candidate protein biomarkers.

Results: There were 16 significantly upregulated and 17 significantly downregulated proteins in the vitreous of three AIR patients compared to controls. The most significantly upregulated proteins included lysozyme C (LYSC), zinc-alpha-2-glycoprotein (ZA2G), complement factor D (CFAD), transforming growth factor-beta induced protein (BGH3), beta-crystallin B2, and alpha-crystallin A chain. The most significantly downregulated proteins included disco-interacting protein 2 homolog (DIP2C), retbindin (RTBDN), and amyloid beta precursor like protein 2 (APLP2). Pathway analysis revealed that vascular endothelial growth factor (VEGF) signaling was a top represented pathway in the vitreous of AIR patients compared to controls. In comparison to a different cohort of three AIR patients analyzed by multiplex ELISA, a commonly differentially expressed protein was neuronal cell adhesion molecule (NrCAM) with p-values of 0.027 in the LC-MS/MS dataset and 0.035 in the ELISA dataset.

Conclusion: Protein biomarkers such as NrCAM in the vitreous may eventually help diagnose AIR.

}, issn = {2666-9145}, doi = {10.1016/j.xops.2022.100131}, author = {Al-Moujahed, Ahmad and Velez, Gabriel and Vu, Jennifer T and Lima de Carvalho, Jose R and Levi, Sarah R and Bassuk, Alexander G and Sepah, Yasir J and Tsang, Stephen H and Mahajan, Vinit B} } @article {1886, title = {Proteomics in uveal melanoma.}, journal = {Curr Opin Ophthalmol}, year = {2022}, month = {2022 Jan 31}, abstract = {

PURPOSE OF REVIEW: This article reviews the latest proteomic research on uveal melanoma.

RECENT FINDINGS: Proteomic analysis of uveal melanoma cell lines and tissue specimens has improved our understanding of the pathophysiology of uveal melanoma and helped identify potential prognostic biomarkers. Circulating proteins in patient serum may aid in the surveillance of metastatic disease. The proteomes of aqueous and vitreous biopsy specimens may provide safer biomarkers for metastatic risk and candidate therapeutic targets in uveal melanoma. Proteomic analysis has the potential to benefit patient outcomes by improving diagnosis, prognostication, surveillance, and treatment of uveal melanoma.

SUMMARY: These recent findings demonstrate that proteomic analysis is an important area of research to better understand the pathophysiology of uveal melanoma and improve the personalized management of our patients.

}, issn = {1531-7021}, doi = {10.1097/ICU.0000000000000835}, author = {Heiferman, Michael J and Mahajan, Vinit B and Mruthyunjaya, Prithvi} } @article {1901, title = {A protocol to inject ocular drug implants into mouse eyes.}, journal = {STAR Protoc}, volume = {3}, year = {2022}, month = {2022 03 18}, pages = {101143}, abstract = {

Ocular drug implants (ODIs) are beneficial for treating ocular diseases. However, the lack of a robust injection approach for small-eyed model organisms has been a major technical limitation in developing ODIs. Here, we present a cost-effective, minimally invasive protocol to deliver ODIs into the mouse vitreous called Mouse Implant Intravitreal Injection (MI3). MI3 provides two alternative surgical approaches (air-pressure or plunger) to deliver micro-scaled ODIs into milli-scaled eyes, and expands the preclinical platforms to determine ODIs\&$\#$39; efficacy, toxicity, and pharmacokinetics. For complete details on the use and execution of this protocol, please refer to Sun et\ al. (2021).

}, keywords = {Animals, Drug Implants, Intravitreal Injections, Mice, Vitreous Body}, issn = {2666-1667}, doi = {10.1016/j.xpro.2022.101143}, author = {Lin, Cheng-Hui and Sun, Young Joo and Lee, Soo Hyeon and Mujica, Elena M and Kunchur, Caitlin R and Wu, Man-Ru and Yang, Jing and Jung, Youn Soo and Chiang, Bryce and Wang, Sui and Mahajan, Vinit B} } @article {2027, title = {Protocol to quantify enzymatic effects on vitreous liquefaction in porcine eyes using a transwell-plate system.}, journal = {STAR Protoc}, volume = {3}, year = {2022}, month = {2022 Oct 06}, pages = {101754}, abstract = {

This protocol describes an ex\ vivo model to quantify enzymatic effects on vitreous liquefaction using porcine eyes in a transwell-plate system via induced syneresis. It provides a standardized dissection process and performs critical steps for gel-liquid separation with high precision, minimal tissue loss, and scalability. The protocol can be applied to other studies investigating vitreous liquefaction or gelatinous tissue analysis and can also serve to study vitreous liquefaction in\ vivo as it may occur during aging or disease progression.

}, issn = {2666-1667}, doi = {10.1016/j.xpro.2022.101754}, author = {Wolf, Julian and Sabage, Lu{\'\i}s E and Sun, Young Joo and Mahajan, Vinit B} } @article {2021, title = {REPRODUCTIVE OPHTHALMOLOGY: The Intersection of Inherited Eye Diseases and Reproductive Technologies.}, journal = {Retina}, volume = {42}, year = {2022}, month = {2022 11 01}, pages = {2025-2030}, abstract = {

PURPOSE: To propose a working framework for patients with inherited eye diseases presenting to ophthalmologists who are interested in assisted reproductive technology and preimplantation genetic testing.

METHODS: Retrospective chart review and case series of three families with inherited eye diseases who successfully underwent preimplantation genetic testing, in vitro fertilization, and birth of unaffected children.

RESULTS: Preimplantation genetic testing was performed for three families with different inherited eye diseases, which included autosomal dominant retinitis pigmentosa, autosomal recessive achromatopsia, and X-linked Goltz syndrome. Preimplantation genetic testing led to the identification of unaffected embryos, which were then selected for in vitro fertilization and resulted in the birth of unaffected children.

CONCLUSION: A close collaboration between patients, families, ophthalmologists, reproductive genetic counselors, and reproductive endocrinology and infertility specialists is the ideal model for taking care of patients interested in preimplantation genetic testing for preventing the transmission of inherited eye diseases.

}, keywords = {Child, Eye Diseases, Hereditary, Female, Fertilization in Vitro, Humans, Ophthalmology, Pregnancy, Preimplantation Diagnosis, Retrospective Studies}, issn = {1539-2864}, doi = {10.1097/IAE.0000000000003591}, author = {Park, Jong G and Xu, Christine L and Boyd, Allison and Aghajanova, Lusine and Mahajan, Vinit B and Wood, Edward H} } @article {1906, title = {Retinal artery and vein occlusion in calciphylaxis.}, journal = {Am J Ophthalmol Case Rep}, volume = {26}, year = {2022}, month = {2022 Jun}, pages = {101433}, abstract = {

Purpose: To report a case of branch retinal artery occlusion (BRAO) followed by branch retinal vein occlusion (BRVO) and paracentral acute middle maculopathy (PAMM) in a patient with confirmed calciphylaxis.

Observations: A 52-year-old female with a history of BRAO in the right eye one-year prior presented with decreased vision and a new inferotemporal scotoma. Computed tomography angiography of the head and neck demonstrated vascular calcifications at the origin of both ophthalmic arteries, which were otherwise poorly visualized. Ophthalmic examination demonstrated retinal whitening superiorly with intraretinal hemorrhages inferiorly. Optical coherence tomography (OCT) demonstrated middle retinal hyperreflectivity and a mild epiretinal membrane. Fluorescein angiography (FFA) demonstrated delayed perfusion of superior retinal arcade. On further questioning, patient was found to have a history of IgA nephropathy with end-stage renal disease, secondary hyperparathyroidism and calciphylaxis. Calciphylaxis is a systemic disease, characterized by high levels of calcium and progressive calcification of the vascular medial layer leading to ischemia. Anterior ischemic optic neuropathy (AION) and crystalline retinopathy have been reported as ocular manifestations of calciphylaxis, however, there are very few reports on ophthalmic manifestations of calciphylaxis.

Conclusion and importance: Clinical manifestations of calciphylaxis are variable and a detailed clinical history is important to suspect calciphylaxis. Calciphylaxis should be considered in the differential diagnosis of BRAO, BRVO, PAMM or any ophthalmic vascular manifestation in patients with end-stage renal disease.

}, issn = {2451-9936}, doi = {10.1016/j.ajoc.2022.101433}, author = {Naranjo, Andrea and Rayess, Nadim and Ryan, Emily and Iv, Michael and Mahajan, Vinit B} } @article {1891, title = {Surgical management of acanthamoeba chorioretinitis.}, journal = {Am J Ophthalmol Case Rep}, volume = {25}, year = {2022}, month = {2022 Mar}, pages = {101388}, abstract = {

Purpose: Acanthamoeba chorioretinitis is a rare manifestation of the parasitic infection, and reported cases often result in enucleation. Surgical removal of Acanthamoeba chorioretinitis has not been previously described. We report a surgical case of Acanthamoeba chorioretinitis spread from keratitis that ultimately resulted in a disease-free outcome.

Observations: A healthy 80-year-old male with a history of keratoconus requiring a penetrating keratoplasty in the fellow eye presented with a severe corneal ulcer clinically consistent with Acanthamoeba keratitis. He ultimately required a penetrating keratoplasty and improved clinically until he developed vitritis on post-operative month 1 and was diagnosed with endophthalmitis. B-scan ultrasound demonstrated vitreous opacities and a large retinal mass that reduced in size following serial intravitreal injections of antibiotics, oral antibiotics, and a limited pars plana vitrectomy. He underwent a repeat pars plana vitrectomy 6 weeks later and a retinal mass in the mid-periphery with an associated tractional retinal detachment was noted. A localized retinectomy was performed around the lesion which was excised entirely, and silicone oil was instilled. Pathology of the lesion showed acute and chronic granulomatous necrotizing inflammation with the presence of several definitive amoebic organisms and numerous cells suspicious for amoebae. The patient was maintained on oral antibiotics by the Infectious Disease Service and was disease-free 1-year post-infection.

Conclusions and importance: Acanthamoeba chorioretinitis is a rare, devastating disease and often leads to enucleation. We present a surgical case showing control of the infection utilizing a surgical retinectomy. Aggressive local therapy and a multidisciplinary approach with the Infectious Disease Service may lead to a successful outcome.

}, issn = {2451-9936}, doi = {10.1016/j.ajoc.2022.101388}, author = {Mishra, Kapil and Velez, Gabriel and Roybal, C Nathaniel and Mahajan, Vinit B} } @article {1771, title = {Genetics of Uveitis.}, journal = {Ocul Immunol Inflamm}, volume = {29}, year = {2021}, month = {2021 Feb 17}, pages = {215-218}, issn = {1744-5078}, doi = {10.1080/09273948.2021.1910430}, author = {Cunningham, Emmett T and Pichi, Francesco and Mahajan, Vinit B and Rosenbaum, James T and Zierhut, Manfred} } @article {2045, title = {Intravitreal Fluocinolone Acetonide (Retisert) Implantation Using a Keratome Blade.}, journal = {J Vitreoretin Dis}, volume = {5}, year = {2021}, month = {2021 Jan-Feb}, pages = {66-67}, issn = {2474-1272}, doi = {10.1177/2474126420946911}, author = {Pasricha, Malini Veerappan and Callaway, Natalia F and Mahajan, Vinit B} } @article {2046, title = {An intravitreal implant injection method for sustained drug delivery into mouse eyes.}, journal = {Cell Rep Methods}, volume = {1}, year = {2021}, month = {2021 Dec 20}, abstract = {

Using small molecule drugs to treat eye diseases carries benefits of specificity, scalability, and transportability, but their efficacy is significantly limited by a fast intraocular clearance rate. Ocular drug implants (ODIs) present a compelling means for the slow and sustained release of small molecule drugs inside the eye. However, methods are needed to inject small molecule ODIs into animals with small eyes, such as mice, which are the primary genetic models for most human ocular diseases. Consequently, it has not been possible to fully investigate efficacy and ocular pharmacokinetics of ODIs. Here, we present a robust, cost-effective, and minimally invasive method called \"mouse implant intravitreal injection\" (MI3) to deliver ODIs into mouse eyes. This method will expand ODI research to cover the breadth of human eye diseases modeled in mice.

}, issn = {2667-2375}, doi = {10.1016/j.crmeth.2021.100125}, author = {Sun, Young Joo and Lin, Cheng-Hui and Wu, Man-Ru and Lee, Soo Hyeon and Yang, Jing and Kunchur, Caitlin R and Mujica, Elena M and Chiang, Bryce and Jung, Youn Soo and Wang, Sui and Mahajan, Vinit B} } @article {1786, title = {Liquid biopsy proteomics of uveal melanoma reveals biomarkers associated with metastatic risk.}, journal = {Mol Cancer}, volume = {20}, year = {2021}, month = {2021 02 24}, pages = {39}, issn = {1476-4598}, doi = {10.1186/s12943-021-01336-4}, author = {Velez, Gabriel and Nguyen, Huy V and Chemudupati, Teja and Ludwig, Cassie A and Toral, Marcus and Reddy, Sunil and Mruthyunjaya, Prithvi and Mahajan, Vinit B} } @article {1861, title = {Molecular Characterization of a Rare Case of Bilateral Vitreoretinal T Cell Lymphoma through Vitreous Liquid Biopsy.}, journal = {Int J Mol Sci}, volume = {22}, year = {2021}, month = {2021 Jun 05}, abstract = {

Vitreoretinal lymphoma (VRL) is an uncommon eye malignancy, and VRLs of T cell origin are rare. They are difficult to treat, and their molecular underpinnings, including actionable genomic alterations, remain to be elucidated. At present, vitreous fluid liquid biopsies represent a valuable VRL sample for molecular analysis to study VRLs. In this study, we report the molecular diagnostic workup of a rare case of bilateral T cell VRL and characterize its genomic landscape, including identification of potentially targetable alterations. Using next-generation sequencing of vitreous-derived DNA with a pan-cancer 126-gene panel, we found a copy number gain of and copy number loss of tumor suppressor . To the best of our knowledge, this represents the first exploration of the T cell VRL cancer genome and supports vitreous liquid biopsy as a suitable approach for precision oncology treatments.

}, keywords = {Biomarkers, Tumor, DNA (Cytosine-5-)-Methyltransferases, DNA Copy Number Variations, DNA Methyltransferase 3A, Gene Expression Regulation, Neoplastic, High-Throughput Nucleotide Sequencing, Humans, Liquid Biopsy, Lymphoma, T-Cell, Male, Middle Aged, Neoplasm Proteins, Proto-Oncogene Proteins B-raf, Retinal Neoplasms, Vitreous Body}, issn = {1422-0067}, doi = {10.3390/ijms22116099}, author = {Cani, Andi K and Toral, Marcus A and Balikov, Daniel A and Betz, Bryan L and Hu, Kevin and Liu, Chia-Jen and Prifti, Matthew V and Chinnaiyan, Arul M and Tomlins, Scott A and Mahajan, Vinit B and Rao, Rajesh C} } @article {1776, title = {Peptidomimetics Therapeutics for Retinal Disease.}, journal = {Biomolecules}, volume = {11}, year = {2021}, month = {2021 Feb 24}, abstract = {

Ocular disorders originating in the retina can result in a partial or total loss of vision, making drug delivery to the retina of vital importance. However, effectively delivering drugs to the retina remains a challenge for ophthalmologists due to various anatomical and physicochemical barriers in the eye. This review introduces diverse administration routes and the accordant pharmacokinetic profiles of ocular drugs to aid in the development of safe and efficient drug delivery systems to the retina with a focus on peptidomimetics as a growing class of retinal drugs, which have great therapeutic potential and a high degree of specificity. We also discuss the pharmacokinetic profiles of small molecule drugs due to their structural similarity to small peptidomimetics. Lastly, various formulation strategies are suggested to overcome pharmacokinetic hurdles such as solubility, retention time, enzymatic degradation, tissue targeting, and membrane permeability. This knowledge can be used to help design ocular delivery platforms for peptidomimetics, not only for the treatment of various retinal diseases, but also for the selection of potential peptidomimetic drug targets.

}, issn = {2218-273X}, doi = {10.3390/biom11030339}, author = {Parsons, Dylan E and Lee, Soo Hyeon and Sun, Young Joo and Velez, Gabriel and Bassuk, Alexander G and Smith, Mark and Mahajan, Vinit B} } @article {1856, title = {The Present and Future of Mitochondrial-Based Therapeutics for Eye Disease.}, journal = {Transl Vis Sci Technol}, volume = {10}, year = {2021}, month = {2021 07 01}, pages = {4}, abstract = {

Translational Relevance: Mitochondria are viable therapeutic targets for a broad spectrum of ocular diseases.

}, keywords = {Eye Diseases, Humans, Mitochondria}, issn = {2164-2591}, doi = {10.1167/tvst.10.8.4}, author = {Ji, Marco H and Kreymerman, Alexander and Belle, Kinsley and Ghiam, Benjamin K and Muscat, Stephanie P and Mahajan, Vinit B and Enns, Gregory M and Mercola, Mark and Wood, Edward H} } @article {1781, title = {Structure-based phylogeny identifies Avoralstat as a TMPRSS2 inhibitor that prevents SARS-CoV-2 infection in mice.}, journal = {J Clin Invest}, year = {2021}, month = {2021 Apr 12}, abstract = {

Drugs targeting host proteins can act prophylactically to reduce viral burden early in disease and limit morbidity, even with antivirals and vaccination. Transmembrane serine protease 2 (TMPRSS2) is a human protease required for SARS-CoV-2 viral entry and may represent such a target. We hypothesized that drugs selected from proteins related by their tertiary structure, rather than their primary structure, were likely to interact with TMPRSS2. We created a structure-based phylogenetic computational tool named 3DPhyloFold to systematically identify structurally similar serine proteases with known therapeutic inhibitors and demonstrated effective inhibition of SARS-CoV-2 infection in vitro and in vivo. Several candidate compounds, Avoralstat, PCI-27483, Antipain, and Soybean-Trypsin-Inhibitor, inhibited TMPRSS2 in biochemical and cell infection assays. Avoralstat, a clinically tested Kallikrein-related B1 inhibitor, inhibited SARS-CoV-2 entry and replication in human airway epithelial cells. In an in vivo proof of principle, Avoralstat significantly reduced lung tissue titers and mitigated weight-loss when administered prophylactically to SARS-CoV-2 susceptible mice indicating its potential to be repositioned for COVID-19 prophylaxis in humans.

}, issn = {1558-8238}, doi = {10.1172/JCI147973}, author = {Sun, Young Joo and Velez, Gabriel and Parsons, Dylan E and Li, Kun and Ortiz, Miguel E and Sharma, Shaunik and McCray, Paul B and Bassuk, Alexander G and Mahajan, Vinit B} } @article {1766, title = {Telegenetics for inherited retinal diseases in the COVID-19 environment.}, journal = {Int J Retina Vitreous}, volume = {7}, year = {2021}, month = {2021 Mar 29}, pages = {25}, abstract = {

Inherited retinal diseases (IRDs) are visually debilitating conditions that affect families worldwide. They require extensive clinical testing, examination, and patient and family counseling, which are frequently accomplished over single-day extended clinic visits. However, the COVID-19 pandemic has limited the number of patients and staff allowed in clinics, leading to interruptions in care. We therefore developed telehealth management protocols for complete or hybrid virtual visits. The three main components of our telegenetics approach included reviewing the diagnostic tests results remotely, in-person or virtual video visits with a retina specialist, and virtual genetic testing using saliva kits. During the first 5\ months of the program, telegenetic care was provided for 80 patients, including 3 international patients, and a spectrum of retinal dystrophies were diagnosed and managed. In conclusion, telegenetic virtual visits ensure continuity of care while reducing patient and provider exposure to SARS-CoV-2 and may continue and expand into other medical genetic conditions long after the pandemic.

}, issn = {2056-9920}, doi = {10.1186/s40942-021-00301-z}, author = {Al-Moujahed, Ahmad and Kumar, Aarushi and Chemudupati, Teja and Tsang, Stephen H and Mahajan, Vinit B} } @article {1416, title = {Fundoscopy-directed genetic testing to re-evaluate negative whole exome sequencing results.}, journal = {Orphanet J Rare Dis}, volume = {15}, year = {2020}, month = {2020 Jan 30}, pages = {32}, abstract = {

BACKGROUND: Whole exome sequencing (WES) allows for an unbiased search of the\ genetic cause of a\ disease. Employing it as a first-tier genetic testing can be favored due to the associated lower incremental cost per diagnosis compared to when using it later in the diagnostic pathway. However, there are technical limitations of WES that can lead to inaccurate negative variant callings. Our study presents these limitations through a re-evaluation of negative WES results using subsequent tests primarily driven by fundoscopic findings. These tests included targeted gene testing, inherited retinal gene panels, whole genome sequencing (WGS), and array comparative genomic hybridization.

RESULTS: Subsequent genetic testing guided by fundoscopy findings identified the following variant types causing retinitis pigmentosa that were not detected by WES: frameshift deletion and nonsense variants in the RPGR gene, 353-bp Alu repeat insertions in the MAK gene, and large exonic deletion variants in the EYS and PRPF31 genes. Deep intronic variants in the ABCA4 gene causing Stargardt disease and the GUCY2D gene causing Leber congenital amaurosis were also identified.

CONCLUSIONS: Negative WES analyses inconsistent with the phenotype should raise clinical suspicion. Subsequent genetic testing may detect genetic variants missed by WES and can make patients eligible for gene replacement therapy and upcoming clinical trials. When phenotypic findings support a genetic etiology, negative WES results should be followed by targeted gene sequencing, array based approach or whole genome sequencing.

}, issn = {1750-1172}, doi = {10.1186/s13023-020-1312-1}, author = {Cho, Ahra and Lima de Carvalho, Jose Ronaldo and Tanaka, Akemi J and Jauregui, Ruben and Levi, Sarah R and Bassuk, Alexander G and Mahajan, Vinit B and Tsang, Stephen H} } @article {1651, title = {Intravitreal methotrexate and fluocinolone acetonide implantation for Vogt-Koyanagi-Harada uveitis.}, journal = {Am J Ophthalmol Case Rep}, volume = {19}, year = {2020}, month = {2020 Sep}, pages = {100859}, abstract = {

Purpose: To report a case of intravitreal methotrexate treatment and fluocinolone acetonide (Retisert\®) implantation in a patient with Vogt-Koyanagi-Harada syndrome (VKH).

Observations: A 34-year-old male was referred for worsening vision and bilateral panuveitis consistent with VKH. He was treated with prednisone, mycophenolate mofetil, prednisolone acetate eye drops, and injections of triamcinolone and adalimumab. He failed to improve with these therapies and developed multiple adverse effects, including hepatotoxicity, severe eye pain, cataracts, and cystoid macular edema. We treated him with intravitreal methotrexate injections in both eyes, which rapidly improved his eye pain, inflammation, and vision. He subsequently underwent fluocinolone acetonide (Retisert\®) implantation, cataract extraction with intraocular lens insertion, and Ahmed tube placement for long-term intraocular pressure control. His vision improved from hand motions to 20/30, intraocular pressure remained stable at 17, there was complete resolution of his panuveitis and uveitic macular edema, and his systemic medications were able to be discontinued.

Conclusions: /Importance: This case demonstrates intravitreal methotrexate may successfully treat intraocular inflammation, pain, and macular edema in VKH. Excellent long-term vision and reduction of adverse effects of systemic medications were also achieved with subsequent fluocinolone acetonide implantation. Combining these two targeted therapies may be an effective strategy in treating VKH in patients who have severe pain and cannot tolerate systemic therapy.

}, issn = {2451-9936}, doi = {10.1016/j.ajoc.2020.100859}, author = {Park, Jong G and Callaway, Natalia F and Ludwig, Cassie A and Mahajan, Vinit B} } @article {1491, title = {Metabolite therapy guided by liquid biopsy proteomics delays retinal neurodegeneration.}, journal = {EBioMedicine}, volume = {52}, year = {2020}, month = {2020 Feb 03}, pages = {102636}, abstract = {

BACKGROUND: Neurodegenerative diseases are incurable disorders caused by progressive neuronal cell death. Retinitis pigmentosa (RP) is a blinding neurodegenerative disease that results in photoreceptor death and progresses to the loss of the entire retinal network. We previously found that proteomic analysis of the adjacent vitreous served as way to indirectly biopsy the retina and identify changes in the retinal proteome.

METHODS: We analyzed protein expression in liquid vitreous biopsies from autosomal recessive (ar)RP patients with PDE6A mutations and arRP mice with Pde6ɑ mutations. Proteomic analysis of retina and vitreous samples identified molecular pathways affected at the onset of photoreceptor death. Based on affected molecular pathways, arRP mice were treated with a ketogenic diet or metabolites involved in fatty-acid synthesis, oxidative phosphorylation, and the tricarboxylic acid (TCA) cycle.

FINDINGS: Dietary supplementation of a single metabolite, ɑ-ketoglutarate, increased docosahexaeonic acid levels, provided neuroprotection, and enhanced visual function in arRP mice. A ketogenic diet delayed photoreceptor cell loss, while vitamin B supplementation had a limited effect. Finally, desorption electrospray ionization mass spectrometry imaging (DESI-MSI) on ɑ-ketoglutarate-treated mice revealed restoration of metabolites that correlated with our proteomic findings: uridine, dihydrouridine, and thymidine (pyrimidine and purine metabolism), glutamine and glutamate (glutamine/glutamate conversion), and succinic and aconitic acid (TCA cycle).

INTERPRETATION: This study demonstrates that replenishing TCA cycle metabolites via oral supplementation prolongs retinal function and provides a neuroprotective effect on the photoreceptor cells and inner retinal network.

FUNDING: NIH grants [R01EY026682, R01EY024665, R01EY025225, R01EY024698, R21AG050437, P30EY026877, 5P30EY019007, R01EY018213, F30EYE027986, T32GM007337, 5P30CA013696], NSF grant CHE-1734082.

}, issn = {2352-3964}, doi = {10.1016/j.ebiom.2020.102636}, author = {Wert, Katherine J and Velez, Gabriel and Kanchustambham, Vijaya L and Shankar, Vishnu and Evans, Lucy P and Sengillo, Jesse D and Zare, Richard N and Bassuk, Alexander G and Tsang, Stephen H and Mahajan, Vinit B} } @article {1531, title = {Modulation of Post-Traumatic Immune Response Using the IL-1 Receptor Antagonist Anakinra for Improved Visual Outcomes.}, journal = {J Neurotrauma}, year = {2020}, month = {2020 Mar 16}, abstract = {

The purpose of this study was to characterize acute changes in inflammatory pathways in the mouse eye after blast-mediated traumatic brain injury (bTBI) and to determine whether modulation of these pathways could protect the structure and function of retinal ganglion cells (RGC). The bTBI was induced in C57BL/6J male mice by exposure to three 20 psi blast waves directed toward the head with the body shielded, with an inter-blast interval of one hour. Acute cytokine expression in retinal tissue was measured through reverse transcription-quantitative polymerase chain reaction (RT-qPCR) four hours post-blast. Increased retinal expression of ( and was observed in bTBI mice exposed to blast when compared with shams, which was associated with activation of microglia and macroglia reactivity, assessed via immunohistochemistry with ionized calcium binding adaptor molecule 1 and glial fibrillary acidic protein, respectively, one week post-blast. Blockade of the IL-1 pathway was accomplished using anakinra, an IL-1RI antagonist, administered intra-peritoneally for one week before injury and continuing for three weeks post-injury. Retinal function and RGC layer thickness were evaluated four weeks post-injury using pattern electroretinogram (PERG) and optical coherence tomography (OCT), respectively. After bTBI, anakinra treatment resulted in a preservation of RGC function and RGC structure when compared with saline treated bTBI mice. Optic nerve integrity analysis demonstrated a trend of decreased damage suggesting that IL-1 blockade also prevents axonal damage after blast. Blast exposure results in increased retinal inflammation including upregulation of pro-inflammatory cytokines and activation of resident microglia and macroglia. This may explain partially the RGC loss we observed in this model, as blockade of the acute inflammatory response after injury with the IL-1R1 antagonist anakinra resulted in preservation of RGC function and RGC layer thickness.

}, issn = {1557-9042}, doi = {10.1089/neu.2019.6725}, author = {Evans, Lucy P and Woll, Addison W and Wu, Shu and Todd, Brittany P and Hehr, Nicole and Hedberg-Buenz, Adam and Anderson, Michael G and Newell, Elizabeth A and Ferguson, Polly J and Mahajan, Vinit B and Harper, Matthew M and Bassuk, Alexander G} } @article {1676, title = {Molecular Surgery: Proteomics of a Rare Genetic Disease Gives Insight into Common Causes of Blindness.}, journal = {iScience}, volume = {23}, year = {2020}, month = {2020 Nov 20}, pages = {101667}, abstract = {

Rare diseases are an emerging global health priority. Although individually rare, the prevalence of rare \"orphan\" diseases is high, affecting approximately 300 million people worldwide. Treatments for these conditions are often inadequate, leaving the disease to progress unabated. Here, we review the clinical features and pathophysiology of neovascular inflammatory vitreoretinopathy (NIV), a rare inflammatory retinal disease caused by mutations in the gene. Although the prevalence of NIV is low (1 in 1,000,000 people), the disease mimics more common causes of blindness (e.g. uveitis, retinitis pigmentosa, proliferative diabetic retinopathy, and proliferative vitreoretinopathy) at distinct clinical stages. There is no cure for NIV to date. We highlight how personalized proteomics helped identify potential stage-specific biomarkers and drug targets in liquid vitreous biopsies. The NIV vitreous proteome revealed enrichment of molecular pathways associated with common retinal pathologies and implicated superior targets for therapeutic drug repositioning. In addition, we review our pipeline for collecting, storing, and analyzing ophthalmic surgical samples. This approach can be adapted to treat a variety of rare genetic diseases.

}, issn = {2589-0042}, doi = {10.1016/j.isci.2020.101667}, author = {Velez, Gabriel and Mahajan, Vinit B} } @article {1486, title = {Novel REEP6 gene mutation associated with autosomal recessive retinitis pigmentosa.}, year = {2020}, author = {Lin Y. and Xu C.L. and Velez G. and Yang J. and Tanaka A.J. and Breazzano M.P. and Mahajan V.B. and Sparrow J.R. and Tsang S.H.} } @article {1571, title = {Optical Gap Biomarker in Cone-Dominant Retinal Dystrophy.}, journal = {Am J Ophthalmol}, year = {2020}, month = {2020 May 20}, abstract = {

PURPOSE: To characterize the progression of optical gaps and expand the known etiologies of this phenotype.

DESIGN: Retrospective cohort study.

METHODS: Thirty-six patients were selected based on the identification of an optical gap on spectral-domain optical coherence tomography (SD-OCT) from a large cohort of patients (n=746) with confirmed diagnoses of inherited retinal dystrophy. The width and height of the gaps in 70 eyes of 36 patients were measured using the caliper tool on Heidelberg Explorer by two independent graders. Measurements of outer and central retinal thickness were also evaluated and correlated with gap dimensions.

RESULTS: Longitudinal analysis confirmed the progressive nature of optical gaps in patients with Stargardt disease, achromatopsia, occult macular dystrophy, and cone dystrophies (p\<0.003). Larger changes in gap width were noted in patients with Stargardt disease (78.1μm/year) and cone dystrophies (31.9μm/year) as compared to patients with achromatopsia (16.2μm/year) and occult macular dystrophy (15.4μm/year). Gap height decreased in patients with Stargardt disease (6.5μm/year) (p=0.02), but increased in patients with achromatopsia (3.3μm/year) and occult macular dystrophy (1.2μm/year). Gap height correlated with measurements of central retinal thickness at the fovea (r=0.782, p=0.00012). Interocular discordance of the gap was observed in 7 patients. Finally, a review of all currently described etiologies of optical gap was summarized.

CONCLUSION: The optical gap is a progressive phenotype seen in an increasing number of etiologies. This progressive nature suggests a use as a biomarker in the understanding of disease progression. Interocular discordance of the phenotype may be a feature of Stargardt disease and cone dystrophies.

}, issn = {1879-1891}, doi = {10.1016/j.ajo.2020.05.016}, author = {Oh, Jin Kyun and Ryu, Joseph and Lima de Carvalho, Jose Ronaldo and Levi, Sarah R and Lee, Winston and Tsamis, Emmanouil and Greenstein, Vivienne C and Mahajan, Vinit B and Allikmets, Rando and Tsang, Stephen H} } @article {1526, title = {Phenotypic variance in Calpain-5 retinal degeneration.}, journal = {Am J Ophthalmol Case Rep}, volume = {18}, year = {2020}, month = {2020 Jun}, pages = {100627}, abstract = {

Purpose: To characterize the phenotype of patients with mild calpain-5 Neovascular Inflammatory Vitreoretinopathy (ADNIV).

Observations: The p.R243L mutation is typically associated with onset in the twenties and severe, progressive uveitis, retinal neovascularization, and intraocular fibrosis. Two subjects with this variant only showed mild peripheral retinal pigmentary degeneration and loss of the ERG b-wave at age 45 and 69, respectively, without signs of uveitis or neovascularization.

Conclusions/Importance: The phenotypic penetrance of a specific variant in CAPN5-vitreoretinopathy may vary significantly in severity. Patients with pigmentary retinal dystrophy may consider gene testing.

}, issn = {2451-9936}, doi = {10.1016/j.ajoc.2020.100627}, author = {Tang, Peter H and Chemudupati, Teja and Wert, Katherine J and Folk, James C and Mahajan, Maryann and Tsang, Stephen H and Bassuk, Alexander G and Mahajan, Vinit B} } @article {1521, title = {Proteomic analysis of intermediate uveitis suggests myeloid cell recruitment and implicates IL-23 as a therapeutic target.}, journal = {Am J Ophthalmol Case Rep}, volume = {18}, year = {2020}, month = {2020 Jun}, pages = {100646}, abstract = {

Purpose: To profile vitreous protein expression of intermediate uveitis (IU) patients.

Observations: We identified a mean of 363\ \±\ 41 unique proteins (mean\ \±\ SD) in IU vitreous and 393\ \±\ 69 unique proteins in control samples using liquid chromatography-tandem mass spectrometry (LC-MS/MS) analysis of liquid vitreous biopsies collected during pars plana vitrectomy. A total of 233 proteins were differentially expressed among control and IU samples, suggesting a protein signature that could distinguish the two groups. Pathway analysis identified 22 inflammatory mediators of the interleukin-12 (IL-12) signaling pathway in IU vitreous. Upstream regulator analysis identified downstream mediators of IL-23 and myeloid differentiation primary response protein (MYD88), both of which are involved in the recruitment and differentiation of myeloid cells. Taken together, our results suggest the recruitment of myeloid cells as an upstream pathway in the pathogenesis of IU.

Conclusions: This study provides insights into proteins that will serve as biomarkers and therapeutic targets for IU. These biomarkers will help design future clinical trials using rational molecular therapeutics.

}, issn = {2451-9936}, doi = {10.1016/j.ajoc.2020.100646}, author = {Sepah, Yasir J and Velez, Gabriel and Tang, Peter H and Yang, Jing and Chemudupati, Teja and Li, Angela S and Nguyen, Quan D and Bassuk, Alexander G and Mahajan, Vinit B} } @article {1631, title = {Quantitative Autofluorescence Following Gene Therapy With Voretigene Neparvovec.}, journal = {JAMA Ophthalmol}, year = {2020}, month = {2020 Jun 18}, issn = {2168-6173}, doi = {10.1001/jamaophthalmol.2020.2018}, author = {Levi, Sarah R and Oh, Jin Kyun and de Carvalho, Jose Ronaldo Lima and Mahajan, Vinit B and Tsang, Stephen H and Sparrow, Janet R} } @article {1576, title = {Reply.}, journal = {Retina}, year = {2020}, month = {2020 Apr 17}, issn = {1539-2864}, doi = {10.1097/IAE.0000000000002828}, author = {Mahajan, Vinit B and Wood, Edward} } @article {1696, title = {Reply to Comment on: Sex Differences in the Repair of Retinal Detachments in the United States.}, journal = {Am J Ophthalmol}, year = {2020}, month = {2020 Nov 18}, issn = {1879-1891}, doi = {10.1016/j.ajo.2020.09.013}, author = {Callaway, Natalia F and Vail, Daniel and Al-Moujahed, Ahmad and Ludwig, Cassie and Ji, Marco H and Mahajan, Vinit B and Pershing, Suzann and Moshfeghi, Darius M} } @article {1671, title = {Retinal Manifestations of Mitochondrial Oxidative Phosphorylation Disorders.}, journal = {Invest Ophthalmol Vis Sci}, volume = {61}, year = {2020}, month = {2020 Oct 01}, pages = {12}, abstract = {

Purpose: The purpose of this paper was to discuss manifestations of primary mitochondrial dysfunctions and whether the retinal pigment epithelium or the photoreceptors are preferentially affected.

Methods: A retrospective analysis was performed of patients with clinically and laboratory confirmed diagnoses of maternally inherited diabetes and deafness (MIDD) or Kearns-Sayre syndrome (KSS). Patients underwent full ophthalmic examination, full-field electroretinogram, and multimodal imaging studies, including short-wavelength autofluorescence, spectral domain-optical coherence tomography, and color fundus photography.

Results: A total of five patients with MIDD and four patients with KSS were evaluated at two tertiary referral centers. Mean age at initial evaluation was 50.3 years old. Nascent outer retinal tubulations corresponding with faint foci of autofluorescence were observed in two patients with MIDD. Characteristic features of this cohort included a foveal sparing phenotype observed in 13 of 18 eyes (72\%), global absence of intraretinal pigment migration, and preserved retinal function on full-field electroretinogram testing in 12 of 16 eyes (75\%). One patient diagnosed with MIDD presented with an unusual pattern of atrophy surrounding the parapapillary region and one patient with KSS presented with an atypical choroideremia-like phenotype.

Conclusions: MIDD and KSS are phenotypically heterogeneous disorders. Several features of disease suggest that primary mitochondrial dysfunction may first affect the retinal pigment epithelium followed by secondary photoreceptor loss. Similarities between primary mitochondrial degenerations and retinal disorders, such as age-related macular degeneration may suggest a primary role of mitochondria in the pathogenesis of these oligogenic disorders.

}, issn = {1552-5783}, doi = {10.1167/iovs.61.12.12}, author = {Oh, Jin Kyun and Lima de Carvalho, Jose Ronaldo and Nuzbrokh, Yan and Ryu, Joseph and Chemudupati, Teja and Mahajan, Vinit B and Sparrow, Janet R and Tsang, Stephen H} } @article {1626, title = {Sex Differences in the Repair of Retinal Detachments in the United States.}, journal = {Am J Ophthalmol}, year = {2020}, month = {2020 Jul 05}, abstract = {

PURPOSE: To determine differences between women and men in the repair of rhegmatogenous retinal detachments (RRD) in the United States.

DESIGN: Retrospective cohort study.

METHODS: SETTING: A large insurance claims database.

PARTICIPANTS: Subjects with an incident RRD between 2007-2015.

PROCEDURES: Demographic data, comorbid ocular conditions associated with RRD,systemic comorbidities,and surgical intervention (pneumatic retinopexy (PR), pars plana vitrectomy (PPV), laser barricade, or scleral buckle (SB)) were collected.

MAIN OUTCOME MEASURES: Odds of receipt of surgical intervention for incident RRD, time to repair, type of intervention, and the rate of reoperation by sex.

RESULTS: The study period included 133 million eligible records with 61,071 cases of incident RRD meeting inclusion criteria among which 43\% (n = 26,289) were women. Women had 34\% reduced odds of receipt of surgical repairof an RRD (OR 0.66, 95\% CI 0.59 - 0.73, p\<0.001) after adjusting for confounders. This effect persisted in all sensitivity models. Among patients that received repair, women were more often delayed (0.17 days, p = 0.04). Women were more likely to undergo primary laser barricade (RRR 1.68, p \< 0.001), primary SB (RRR 1.15, p \< 0.001), and PR (RRR 1.07, p \< 0.04) than men. The odds of reoperation were lower in women (OR 0.91, 95\% CI 0.85 - 0.96, p=0.002) after adjustment.

CONCLUSIONS: Insured women are less likely than insured men to receive surgical intervention for an RRD. If the odds of repair were equal between women and men in the U.S. then 781 more women would receive surgery each year, or 7,029 more during the study period. Women are more likely to have the repair performed with scleral buckle and laser barricade. The reason for thesesex differences in RRD repair remains unknown and requires further investigation.

}, issn = {1879-1891}, doi = {10.1016/j.ajo.2020.06.039}, author = {Callaway, Natalia F and Vail, Daniel and Al-Moujahed, Ahmad and Ludwig, Cassie and Ji, Marco H and Mahajan, Vinit B and Pershing, Suzann and Moshfeghi, Darius M} } @article {1666, title = {Sex Does Not Influence Visual Outcomes After Blast-Mediated Traumatic Brain Injury but IL-1 Pathway Mutations Confer Partial Rescue.}, journal = {Invest Ophthalmol Vis Sci}, volume = {61}, year = {2020}, month = {2020 Oct 01}, pages = {7}, abstract = {

Purpose: In a mouse model of blast-mediated traumatic brain injury (bTBI), interleukin-1 (IL-1)-pathway components were tested as potential therapeutic targets for bTBI-mediated retinal ganglion cell (RGC) dysfunction. Sex was also evaluated as a variable for RGC outcomes post-bTBI.

Methods: Male and female mice with null mutations in genes encoding IL-1α, IL-1β, or IL-1RI were compared to C57BL/6J wild-type (WT) mice after exposure to three 20-psi blast waves given at an interblast interval of 1 hour or to mice receiving sham injury. To determine if genetic blockade of IL-1α, IL-1β, or IL-1RI could prevent damage to RGCs, the function and structure of these cells were evaluated by pattern electroretinogram and optical coherence tomography, respectively, 5 weeks following blast or sham exposure. RGC survival was also quantitatively assessed via immunohistochemical staining of BRN3A at the completion of the study.

Results: Our results showed that male and female WT mice had a similar response to blast-induced retinal injury. Generally, constitutive deletion of IL-1α, IL-1β, or IL-1RI did not provide full protection from the effects of bTBI on visual outcomes; however, injured WT mice had significantly worse visual outcomes compared to the injured genetic knockout mice.

Conclusions: Sex does not affect RGC outcomes after bTBI. The genetic studies suggest that deletion of these IL-1 pathway components confers some protection, but global deletion from birth did not result in a complete rescue.

}, issn = {1552-5783}, doi = {10.1167/iovs.61.12.7}, author = {Evans, Lucy P and Boehme, Nickolas and Wu, Shu and Burghardt, Elliot L and Akurathi, Abhigna and Todd, Brittany P and Newell, Elizabeth A and Ferguson, Polly J and Mahajan, Vinit B and Dutca, Laura M and Harper, Matthew M and Bassuk, Alexander G} } @article {1421, title = {Structural Insights into the Unique Activation Mechanisms of a Non-classical Calpain and Its Disease-Causing Variants.}, journal = {Cell Rep}, volume = {30}, year = {2020}, month = {2020 Jan 21}, pages = {881-892.e5}, abstract = {

Increased calpain activity is linked to neuroinflammation including a heritable retinal disease caused by hyper-activating mutations in the calcium-activated calpain-5 (CAPN5) protease. Although structures for classical calpains are known, the structure of CAPN5, a non-classical calpain, remains undetermined. Here we report the 2.8\ {\r A} crystal structure of the human CAPN5 protease core (CAPN5-PC). Compared to classical calpains, CAPN5-PC requires high calcium concentrations for maximal activity. Structure-based phylogenetic analysis and multiple sequence alignment reveal that CAPN5-PC contains three elongated flexible loops compared to its classical counterparts. The presence of a disease-causing mutation (c.799G\>A, p.Gly267Ser) on the unique PC2L2 loop reveals a function in this region for regulating enzymatic activity. This mechanism could be transferred to distant calpains, using synthetic calpain hybrids, suggesting an evolutionary mechanism for fine-tuning calpain function by modifying flexible loops. Further, the open (inactive) conformation of CAPN5-PC provides structural insight into CAPN5-specific residues that can guide inhibitor design.

}, issn = {2211-1247}, doi = {10.1016/j.celrep.2019.12.077}, author = {Velez, Gabriel and Sun, Young Joo and Khan, Saif and Yang, Jing and Herrmann, Jonathan and Chemudupati, Teja and MacLaren, Robert E and Gakhar, Lokesh and Wakatsuki, Soichi and Bassuk, Alexander G and Mahajan, Vinit B} } @article {1646, title = {Whole-Exome Sequencing of Patients with Posterior Segment Uveitis.}, journal = {Am J Ophthalmol}, year = {2020}, month = {2020 Jul 21}, abstract = {

OBJECTIVE: To elucidate molecular risk factors for posterior segment uveitis using a functional genomics approach.

DESIGN: Genetic Association Cohort Study.

METHODS: SETTING: Single-center study at an academic referral center.

STUDY POPULATION: 164 patients with clinically diagnosed uveitis of the posterior segment.

MAIN OUTCOME MEASURES: Exome sequencing was used to detect variants identified in 164 patients with posterior segment uveitis. A phenotype-driven analysis, protein structural modeling and in silico calculations were then used to rank and predict the functional consequences of key variants.

RESULTS: A total of 203 single nucleotide variants, in 23 genes across 164 patients, were included in this study. Both known and novel variants were identified in genes previously implicated in specific types of syndromic uveitis - such as NOD2 (Blau Syndrome) and CAPN5 NIV (Neovascular Inflammatory Vitreoretinopathy) - as well as variants in genes not previously linked to posterior segment uveitis. Based on a ranked list and protein-protein-interaction network, missense variants in NOD-like receptor family genes (NOD2, NLRC4, NLRP3, and NLRP1), CAPN5, and TYK2 were characterized via structural modeling and in silico calculations to predict how specific variants might alter protein structure and function. The majority of analyzed variants were notably different from wild type.

CONCLUSIONS: This study implicates new pathways and immune signaling proteins that may be associated with posterior segment uveitis susceptibility. A larger cohort and functional studies will help validate the pathogenicity of the mutations identified. In specific cases, whole exome sequencing can help diagnose non-syndromic uveitis patients harboring known variants for syndromic inflammatory diseases.

}, issn = {1879-1891}, doi = {10.1016/j.ajo.2020.07.021}, author = {Li, Angela S and Velez, Gabriel and Darbro, Benjamin and Toral, Marcus A and Yang, Jing and Tsang, Stephen H and Ferguson, Polly J and Folk, James C and Bassuk, Alexander G and Mahajan, Vinit B} } @article {1221, title = {Bilateral Endophthalmitis after Immediately Sequential Bilateral Cataract Surgery.}, journal = {Ophthalmol Retina}, volume = {3}, year = {2019}, month = {2019 Jul}, pages = {618-619}, issn = {2468-7219}, doi = {10.1016/j.oret.2019.04.007}, author = {Callaway, Natalia F and Ji, Marco H and Mahajan, Vinit B and Moshfeghi, Darius M} } @article {1261, title = {CAPN5 genetic inactivation phenotype supports therapeutic inhibition trials.}, journal = {Hum Mutat}, year = {2019}, month = {2019 Aug 12}, abstract = {

Small molecule pharmacological inhibition of dominant human genetic disease is a feasible treatment that does not rely on the development of individual, patient-specific gene therapy vectors. However, the consequences of protein inhibition as a clinical therapeutic are not well-studied. In advance of human therapeutic trials for CAPN5 vitreoretinopathy, genetic inactivation can be used to infer the effect of protein inhibition in vivo. We created a photoreceptor-specific knockout mouse for Capn5 and compared the retinal phenotype to both wild-type and an existing Capn5 knockout mouse model. In humans, CAPN5 loss-of-function gene variants were ascertained in large exome databases from 60,706 unrelated subjects without severe disease phenotypes. Ocular examination of the retina of Capn5 knockout mice by histology and electroretinography showed no significant abnormalities. In humans, there were 22 loss-of-function CAPN5 variants located throughout the gene and in all major protein domains. Structural modeling of coding variants showed these loss-of-function variants were nearby known disease-causing variants within the proteolytic core and in regions of high homology between human CAPN5 and 150 homologs, yet the loss-of-function of CAPN5 was tolerated as opposed to gain-of-function disease-causing variants. These results indicate that localized inhibition of CAPN5 is a viable strategy for hyperactivating disease alleles. This article is protected by copyright. All rights reserved.

}, issn = {1098-1004}, doi = {10.1002/humu.23894}, author = {Wert, Katherine J and Koch, Susanne F and Velez, Gabriel and Hsu, Chun-Wei and Mahajan, Maryann and Bassuk, Alexander G and Tsang, Stephen H and Mahajan, Vinit B} } @article {1451, title = {Comparison of structural progression between ciliopathy and non-ciliopathy associated with autosomal recessive retinitis pigmentosa.}, journal = {Orphanet J Rare Dis}, volume = {14}, year = {2019}, month = {2019 08 01}, pages = {187}, abstract = {

BACKGROUND: To evaluate and compare the progression of ciliopathy and non-ciliopathy autosomal recessive Retinitis Pigmentosa patients (arRP) by measuring the constriction of hyperautofluorescent rings in fundus autofluorescence (FAF) images and the progressive shortening of the ellipsoid zone line width obtained by spectral-domain optical coherence tomography (SD-OCT).

RESULTS: For the ciliopathy group, the estimated mean shortening of the ellipsoid zone line was 259\ μm per year and the ring area decreased at a rate of 2.46\ mm per year. For the non-ciliopathy group, the estimated mean shortening of the ellipsoid zone line was 84\ μm per year and the ring area decreased at a rate of 0.7\ mm per year.

CONCLUSIONS: Our study was able to quantify and compare the loss of EZ line width and short-wavelength autofluorescence (SW-AF) ring constriction progression over time for ciliopathy and non-ciliopathy arRP genes. These results may serve as a basis for modeling RP disease progression, and furthermore, they could potentially be used as endpoints in clinical trials seeking to promote cone and rod survival in RP patients.

}, issn = {1750-1172}, doi = {10.1186/s13023-019-1163-9}, author = {Takahashi, Vitor K L and Xu, Christine L and Takiuti, Julia T and Apatoff, Mary Ben L and Duong, Jimmy K and Mahajan, Vinit B and Tsang, Stephen H} } @article {1401, title = {Compound heterozygous novel frameshift variants in the gene result in Leber congenital amaurosis.}, journal = {Cold Spring Harb Mol Case Stud}, volume = {5}, year = {2019}, month = {2019 Dec}, abstract = {

The () gene encodes an 865-amino acid glycoprotein that is expressed in retinoblastoma cell lines and in the adult retina. The protein is localized to photoreceptor outer segment disc membranes, where it plays a structural role, and in the retinal pigment epithelium (RPE), where it acts as a cytosolic protein that mediates autophagy. Mutations in are typically associated with cone-rod dystrophy 12 (OMIM$\#$3612657), autosomal dominant retinal macular dystrophy 2 (OMIM$\#$608051), autosomal recessive retinitis pigmentosa 41 (OMIM$\#$612095), and Stargardt disease 4 (OMIM$\#$603786). Here we describe the first case of -associated Leber congenital amaurosis (LCA) in a 12-yr-old Asian male, caused by two not previously described deleterious frameshift variants in the compound heterozygous state. Clinical features include the presence of bull{\textquoteright}s eye maculopathy, pendular horizontal nystagmus, and photodysphoria consistent with the clinical diagnosis of LCA. The patient was evaluated using ophthalmic imaging, electroretinography, and whole-exome sequencing. Electroretinography revealed extinguished retinal activity.

}, issn = {2373-2873}, doi = {10.1101/mcs.a004481}, author = {Ragi, Sara D and Lima de Carvalho, Jose Ronaldo and Tanaka, Akemi J and Park, Karen Sophia and Mahajan, Vinit B and Maumenee, Irene H and Tsang, Stephen H} } @article {1211, title = {CRISPR Base Editing in Induced Pluripotent Stem Cells.}, journal = {Methods Mol Biol}, year = {2019}, month = {2019 Jun 28}, abstract = {

Induced pluripotent stem cells (iPSCs) have demonstrated tremendous potential in numerous disease modeling and regenerative medicine-based therapies. The development of innovative gene transduction and editing technologies has further augmented the potential of iPSCs. Cas9-cytidine deaminases, for example, have developed as an alternative strategy to integrate single-base mutations (C~{\textrightarrow}~T or G~{\textrightarrow}~A transitions) at specific genomic loci. In this chapter, we specifically describe CRISPR (clustered regularly interspaced short palindromic repeats) base editing in iPSCs for editing precise locations in the genome. This state-of-the-art approach enables highly efficient and accurate modifications in genes. Thus, this technique not only has the potential to have biotechnology and therapeutic applications but also the ability to reveal underlying mechanisms regarding pathologies caused by specific mutations.

}, issn = {1940-6029}, doi = {10.1007/7651_2019_243}, author = {Chang, Ya-Ju and Xu, Christine L and Cui, Xuan and Bassuk, Alexander G and Mahajan, Vinit B and Tsai, Yi-Ting and Tsang, Stephen H} } @article {1101, title = {Fundus autofluorescence and ellipsoid zone (EZ) line width can be an outcome measurement in RHO-associated autosomal dominant retinitis pigmentosa.}, journal = {Graefes Arch Clin Exp Ophthalmol}, volume = {257}, year = {2019}, month = {2019 Apr}, pages = {725-731}, abstract = {

PURPOSE: To evaluate the progression of retinitis pigmentosa (RP) due to mutations in rhodopsin (RHO) by measuring the short-wavelength autofluorescence (SW-AF) increased autofluorescence ring and ellipsoid zone (EZ)-line width.

METHODS: Fundus autofluorescence (FAF) and spectral domain optical coherence tomography (SD-OCT) images were obtained from 10 patients with autosomal dominant RP due to mutations in the RHO gene. Measurements of ring area on FAF images, as well as the EZ line width on SD-OCT images and horizontal, vertical diameter, were performed by two independent masked graders.

RESULTS: The ring area decreased by a rate of 0.6 {\textpm} 0.2~mm per year. We observed that the EZ line width decreased by an average of 152 {\textpm} 37~μm per year, while the horizontal and vertical diameters decreased by 106 {\textpm} 35~μm and 125 {\textpm} 29~μm per year, respectively. Progression rates were similar between eyes.

CONCLUSIONS: We observed SW-AF ring constriction and a progressive loss of EZ line width over time.

}, issn = {1435-702X}, doi = {10.1007/s00417-018-04234-6}, author = {Takahashi, Vitor K L and Takiuti, Julia T and Carvalho-Jr, Jose R L and Xu, Christine L and Duong, Jimmy K and Mahajan, Vinit B and Tsang, Stephen H} } @article {1226, title = {Gain-of-function mutations in a member of the Src family kinases cause autoinflammatory bone disease in mice and humans.}, journal = {Proc Natl Acad Sci U S A}, volume = {116}, year = {2019}, month = {2019 Jun 11}, pages = {11872-11877}, abstract = {

Autoinflammatory syndromes are characterized by dysregulation of the innate immune response with subsequent episodes of acute spontaneous inflammation. Chronic recurrent multifocal osteomyelitis (CRMO) is an autoinflammatory bone disorder that presents with bone pain and localized swelling. mice, isolated from a mutagenesis screen, exhibit a spontaneous inflammatory paw phenotype that includes sterile osteomyelitis and systemic reduced bone mineral density. To elucidate the molecular basis of the disease, positional cloning of the causative gene for was attempted. Using a candidate gene approach, a missense mutation in the C-terminal region of , a member of Src family tyrosine kinases (SFKs), was identified. For functional confirmation, additional mutations at the N terminus of were introduced in mice by CRISPR/Cas9-mediated genome editing. N-terminal deleterious mutations of abolished the inflammatory phenotype in mice, but in-frame and missense mutations in the same region continue to exhibit the phenotype. The fact that null mutant mice are morphologically normal suggests that the inflammation in this model depends on Fgr products. Furthermore, the levels of C-terminal negative regulatory phosphorylation of Fgr are distinctly reduced compared with that of wild-type Fgr. In addition, whole-exome sequencing of 99 CRMO patients including 88 trios (proband and parents) identified 13 patients with heterozygous coding sequence variants in , including two missense mutant proteins that affect kinase activity. Our results strongly indicate that gain-of-function mutations in are involved in sterile osteomyelitis, and thus targeting SFKs using specific inhibitors may allow for efficient treatment of the disease.

}, issn = {1091-6490}, doi = {10.1073/pnas.1819825116}, author = {Abe, Koichiro and Cox, Allison and Takamatsu, Nobuhiko and Velez, Gabriel and Laxer, Ronald M and Tse, Shirley M L and Mahajan, Vinit B and Bassuk, Alexander G and Fuchs, Helmut and Ferguson, Polly J and Hrabe de Angelis, Martin} } @article {1446, title = {Hypoxic drive caused type 3 neovascularization in a preclinical model of exudative age-related macular degeneration.}, journal = {Hum Mol Genet}, volume = {28}, year = {2019}, month = {2019 10 15}, pages = {3475-3485}, abstract = {

Hypoxia associated with the high metabolic demand of rods has been implicated in the pathology of age-related macular degeneration (AMD), the most common cause of adult blindness in the developed world. The majority of AMD-associated severe vision loss cases are due to exudative AMD, characterized by neovascularization. To further investigate the causes and histopathology of exudative AMD, we conditionally induced hypoxia in a novel preclinical AMD model (Pde6gcreERT2/+;Vhl-/-) by targeting Vhl and used multimodal imaging and immunohistochemistry to track the development of hypoxia-induced neovascularization. In addition to developing a preclinical model that phenocopies exudative AMD, our studies revealed that the photoreceptor hypoxic response initiates and drives type 3 neovascularization, mainly in the outer retina. Activation of the VHL-HIF1a-VEGF-EPO pathway in the adult retina led to long-term neovascularization, retinal hemorrhages and compromised retinal layers. Our novel preclinical model would accelerate the testing of therapies that use metabolomic approaches to ameliorate AMD.

}, issn = {1460-2083}, doi = {10.1093/hmg/ddz159}, author = {Zhang, Lijuan and Cui, Xuan and Han, Yangjun and Park, Karen Sophia and Gao, Xiaohong and Zhang, Ximei and Yuan, Zhigang and Hu, Yong and Hsu, Chun-Wei and Li, Xiaorong and Bassuk, Alexander G and Mahajan, Vinit B and Wang, Nan-Kai and Tsang, Stephen H} } @article {1216, title = {In trans variant calling reveals enrichment for compound heterozygous variants in genes involved in neuronal development and growth.}, journal = {Genet Res (Camb)}, volume = {101}, year = {2019}, month = {2019 Jun 13}, pages = {e8}, abstract = {

Compound heterozygotes occur when different variants at the same locus on both maternal and paternal chromosomes produce a recessive trait. Here we present the tool VarCount for the quantification of variants at the individual level. We used VarCount to characterize compound heterozygous coding variants in patients with epileptic encephalopathy and in the 1000 Genomes Project participants. The Epi4k data contains variants identified by whole exome sequencing in patients with either Lennox-Gastaut Syndrome (LGS) or infantile spasms (IS), as well as their parents. We queried the Epi4k dataset (264 trios) and the phased 1000 Genomes Project data (2504 participants) for recessive variants. To assess enrichment, transcript counts were compared between the Epi4k and 1000 Genomes Project participants using minor allele frequency (MAF) cutoffs of 0.5 and 1.0\%, and including all ancestries or only probands of European ancestry. In the Epi4k participants, we found enrichment for rare, compound heterozygous variants in six genes, including three involved in neuronal growth and development - PRTG (p = 0.00086, 1\% MAF, combined ancestries), TNC (p = 0.022, 1\% MAF, combined ancestries) and MACF1 (p = 0.0245, 0.5\% MAF, EU ancestry). Due to the total number of transcripts considered in these analyses, the enrichment detected was not significant after correction for multiple testing and higher powered or prospective studies are necessary to validate the candidacy of these genes. However, PRTG, TNC and MACF1 are potential novel recessive epilepsy genes and our results highlight that compound heterozygous variants should be considered in sporadic epilepsy.

}, issn = {1469-5073}, doi = {10.1017/S0016672319000065}, author = {Cox, Allison J and Grady, Fillan and Velez, Gabriel and Mahajan, Vinit B and Ferguson, Polly J and Kitchen, Andrew and Darbro, Benjamin W and Bassuk, Alexander G} } @article {1111, title = {In Vivo Expression of Mutant Calpains in the Eye Using Lentivirus.}, journal = {Methods Mol Biol}, volume = {1915}, year = {2019}, month = {2019}, pages = {233-247}, abstract = {

Exome sequencing has identified many candidate genes and mutations for human diseases, but the functional validation of these candidates is a time-consuming and costly process. Here, we describe a method which uses lentiviruses to overexpress calpain mutations that may play a role in dominant diseases such as autosomal dominant neovascular inflammatory vitreoretinopathy (ADNIV). The use of lentivirus to deliver the mutant calpain allows for a cost-effective, rapid, and efficient approach to test whether or not a candidate gene mutation from exome sequencing acts as the disease-causing allele for a human disorder. This method also provides for a comparison of different candidate mutations from a single gene identified by exome sequencing, as well as elucidating the mechanisms underlying these complex human disorders. Furthermore, this chapter focuses on two different methods to deliver mutant calpain to the cells of the eye, using either a subretinal or an intravitreal injection of the lentivirus into the mouse eye.

}, issn = {1940-6029}, doi = {10.1007/978-1-4939-8988-1_18}, author = {Wert, Katherine J and Mahajan, Vinit B} } @article {1236, title = {Insights into Retinal Development Using Live Imaging in Female Carriers of Choroideremia.}, journal = {Ophthalmic Surg Lasers Imaging Retina}, volume = {50}, year = {2019}, month = {2019 May 01}, pages = {e158-e162}, abstract = {

Lineage tracing can provide key insights into the development of tissues, such as the retina. Yet it is not possible to manipulate human cells during embryogenesis. The authors observed a distinct phenotype in female carriers of X-linked disorders, in particular, carriers of choroideremia caused by mutations in CHM, encoding Rab escort protein-1. The authors found that X chromosome inactivation provides a method for retinal lineage tracing in human patients. Live imaging of female carriers displays a developmental pattern that is different within the peripheral retina compared with the posterior retina and provides important insights into the development and migration of retinal cells. [Ophthalmic Surg Lasers Imaging Retina. 2019;50:e158-e162.].

}, issn = {2325-8179}, doi = {10.3928/23258160-20190503-15}, author = {Wert, Katherine J and Bakall, Benjamin and Bassuk, Alexander G and Tsang, Stephen H and Mahajan, Vinit B} } @article {1476, title = {Mechanisms of neurodegeneration in a preclinical autosomal dominant retinitis pigmentosa knock-in model with a RhoD190N mutation.}, year = {2019}, author = {Sancho-Pelluz J and Cui X, Lee W and Tsai YT and Wu WH and Justus S and Washington I and Hsu CW and Park KS and Koch S and Velez G and Bassuk AG and Mahajan VB and Lin CS and Tsang SH} } @article {1466, title = {Novel mutations in the 3-box motif of the BACK domain of KLHL7 associated with nonsyndromic autosomal dominant retinitis pigmentosa. }, year = {2019}, author = {Oh JK and Lima de Carvalho JR Jr and Sun YJ, Ragi S and Yang J, Levi SR and Ryu J and Bassuk AG and Mahajan VB and Tsang SH} } @article {1266, title = {Opposing T cell responses in experimental autoimmune encephalomyelitis.}, journal = {Nature}, year = {2019}, month = {2019 Aug 07}, abstract = {

Experimental autoimmune encephalomyelitis is a model for multiple sclerosis. Here we show that induction generates successive waves of clonally expanded CD4, CD8 and γδ T cells in the blood and central nervous system, similar to gluten-challenge studies of patients with coeliac disease. We also find~major expansions of CD8 T cells in patients with multiple sclerosis. In autoimmune encephalomyelitis, we find that most expanded CD4 T cells are specific for the inducing myelin peptide MOG. By contrast, surrogate peptides derived from a yeast peptide major histocompatibility complex library of some of the clonally expanded CD8 T cells inhibit disease by suppressing the proliferation of MOG-specific CD4 T cells. These results suggest that the induction of autoreactive CD4 T cells triggers an opposing mobilization of regulatory CD8 T cells.

}, issn = {1476-4687}, doi = {10.1038/s41586-019-1467-x}, author = {Saligrama, Naresha and Zhao, Fan and Sikora, Michael J and Serratelli, William S and Fernandes, Ricardo A and Louis, David M and Yao, Winnie and Ji, Xuhuai and Idoyaga, Juliana and Mahajan, Vinit B and Steinmetz, Lars M and Chien, Yueh-Hsiu and Hauser, Stephen L and Oksenberg, Jorge R and Garcia, K Christopher and Davis, Mark M} } @article {1091, title = {Optical Coherence Tomography Angiography of RPGR-Associated Retinitis Pigmentosa Suggests Foveal Avascular Zone is a Biomarker for Vision Loss.}, journal = {Ophthalmic Surg Lasers Imaging Retina}, volume = {50}, year = {2019}, month = {2019 02 01}, pages = {e44-e48}, abstract = {

RPGR-associated retinitis pigmentosa (RP) is a progressive disease with retina degeneration. Optical coherence tomography angiography (OCTA) is an imaging technique that provides novel insights. The authors report two affected male siblings who underwent OCTA imaging. The area of the foveal avascular zone (FAZ) was measured. Although the younger sibling exhibited more advanced clinical disease, his visual acuity was superior to his older sibling. OCTA imaging revealed a better preserved FAZ in the younger sibling as the reason for this. It also highlighted attenuation of choriocapillaris / choroid layers as biomarkers for disease severity. This provides new insights into retinal degeneration in RPGR-associated RP. [Ophthalmic Surg Lasers Imaging Retina. 2019;50:e44-e48.].

}, keywords = {Biomarkers, Capillaries, Choroid, Eye Proteins, Fluorescein Angiography, Fovea Centralis, Humans, Male, Middle Aged, Retinitis Pigmentosa, Tomography, Optical Coherence, Vision Disorders}, issn = {2325-8179}, doi = {10.3928/23258160-20190129-18}, author = {Tang, Peter H and Jauregui, Ruben and Tsang, Stephen H and Bassuk, Alexander G and Mahajan, Vinit B} } @article {1231, title = {Proteomic insight into the pathogenesis of CAPN5-vitreoretinopathy.}, journal = {Sci Rep}, volume = {9}, year = {2019}, month = {2019 May 20}, pages = {7608}, abstract = {

CAPN5 Neovascular Inflammatory Vitreoretinopathy (CAPN5-NIV; OMIM 193235) is a poorly-understood rare, progressive inflammatory intraocular disease with limited therapeutic options. To profile disease effector proteins in CAPN5-NIV patient vitreous, liquid vitreous biopsies were collected from two groups: eyes from control subjects (n = 4) with idiopathic macular holes (IMH) and eyes from test subjects (n = 12) with different stages of CAPN5-NIV. Samples were analyzed by liquid chromatography-tandem mass spectrometry (LC-MS/MS). Protein expression changes were evaluated by principal component analysis, 1-way ANOVA (significant p-value < 0.05), hierarchical clustering, gene ontology, and pathway representation. There were 216 differentially-expressed proteins (between CAPN5-NIV and control vitreous), including those unique to and abundant in each clinical stage. Gene ontology analysis revealed decreased synaptic signaling proteins in CAPN5-NIV vitreous compared to controls. Pathway analysis revealed that inflammatory mediators of the acute phase response and the complement cascade were highly-represented. The CAPN5-NIV vitreous proteome displayed characteristic enrichment of proteins and pathways previously-associated with non-infectious posterior uveitis, rhegmatogenous retinal detachment (RRD), age-related macular degeneration (AMD), proliferative diabetic retinopathy (PDR), and proliferative vitreoretinopathy (PVR). This study expands our knowledge of affected molecular pathways in CAPN5-NIV using unbiased, shotgun proteomic analysis rather than targeted detection platforms. The high-levels and representation of acute phase response proteins suggests a functional role for the innate immune system in CAPN5-NIV pathogenesis.

}, issn = {2045-2322}, doi = {10.1038/s41598-019-44031-7}, author = {Velez, Gabriel and Yang, Jing and Li, Angela S and Tsang, Stephen H and Bassuk, Alexander G and Mahajan, Vinit B} } @article {1406, title = {A Reversible Silicon Oil-Induced Ocular Hypertension Model in Mice.}, journal = {J Vis Exp}, year = {2019}, month = {2019 Nov 15}, abstract = {

Elevated intraocular pressure (IOP) is a well-documented risk factor for glaucoma. Here we describe a novel, effective method for consistently inducing stable IOP elevation in mice that mimics the post-operative complication of using silicone oil (SO) as a tamponade agent in human vitreoretinal surgery. In this protocol, SO is injected into the anterior chamber of the mouse eye to block the pupil and prevent inflow of aqueous humor. The posterior chamber accumulates aqueous humor and this in turn increases the IOP of the posterior segment. A single SO injection produces reliable, sufficient, and stable IOP elevation, which induces significant glaucomatous neurodegeneration. This model is a true replicate of secondary glaucoma in the eye clinic. To further mimic the clinical setting, SO can be removed from the anterior chamber to reopen the drainage pathway and allow inflow of aqueous humor, which is drained through the trabecular meshwork (TM) at the angle of the anterior chamber. Because IOP quickly returns to normal, the model can be used to test the effect of lowering IOP on glaucomatous retinal ganglion cells. This method is straightforward, does not require special equipment or repeat procedures, closely simulates clinical situations, and may be applicable to diverse animal species. However, minor modifications may be required.

}, issn = {1940-087X}, doi = {10.3791/60409}, author = {Zhang, Jie and Fang, Fang and Li, Liang and Huang, Haoliang and Webber, Hannah C and Sun, Yang and Mahajan, Vinit B and Hu, Yang} } @article {1241, title = {Silicone oil-induced ocular hypertension and glaucomatous neurodegeneration in mouse.}, journal = {Elife}, volume = {8}, year = {2019}, month = {2019 May 15}, abstract = {

Understanding the molecular mechanism of glaucoma and development of neuroprotectants is significantly hindered by the lack of a reliable animal model that accurately recapitulates human glaucoma. Here, we sought to develop a mouse model for the secondary glaucoma that is often observed in humans after silicone oil (SO) blocks the pupil or migrates into the anterior chamber following vitreoretinal surgery. We observed significant intraocular pressure (IOP) elevation after intracameral injection of SO, and that SO removal allows IOP to return quickly to normal. This simple, inducible and reversible mouse ocular hypertension model shows dynamic changes of visual function that correlate with progressive retinal ganglion cell (RGC) loss and axon degeneration. It may be applicable with only minor modifications to a range of animal species in which it will generate stable, robust IOP elevation and significant neurodegeneration that will facilitate selection of neuroprotectants and investigating the pathogenesis of ocular hypertension-induced glaucoma.

}, issn = {2050-084X}, doi = {10.7554/eLife.45881}, author = {Zhang, Jie and Li, Liang and Huang, Haoliang and Fang, Fang and Webber, Hannah C and Zhuang, Pei and Liu, Liang and Dalal, Roopa and Tang, Peter H and Mahajan, Vinit B and Sun, Yang and Li, Shaohua and Zhang, Mingchang and Goldberg, Jeffrey L and Hu, Yang} } @article {2047, title = {Therapeutic Window for Phosphodiesterase 6-Related Retinitis Pigmentosa.}, journal = {JAMA Ophthalmol}, volume = {137}, year = {2019}, month = {2019 Jun 01}, pages = {679-680}, keywords = {Cone-Rod Dystrophies, Cyclic Nucleotide Phosphodiesterases, Type 6, Eye Proteins, Follow-Up Studies, Humans, Mutation, Retinitis Pigmentosa}, issn = {2168-6173}, doi = {10.1001/jamaophthalmol.2018.6381}, author = {Wang, Nan-Kai and Mahajan, Vinit B and Tsang, Stephen H} } @article {1086, title = {Traumatic chorioretinitis sclopetaria: Risk factors, management, and prognosis.}, journal = {Am J Ophthalmol Case Rep}, volume = {14}, year = {2019}, month = {2019 Jun}, pages = {39-46}, abstract = {

Purpose: To describe new cases of sclopetaria and evaluate the risk factors, management, and visual prognosis of all reported cases in the literature.

Observations: We performed a retrospective, observational case series. This study included six cases (median age 23, interquartile range 33) of sclopetaria. Additionally, literature searches were conducted in the PubMed and Cochrane Library databases to uncover risk factors associated with all published cases of sclopetaria. Main outcome measure was best corrected visual acuity (BCVA) worse than 20/20. Sixty-seven cases (71 eyes) of sclopetaria have been reported, of which 59 cases (61 eyes) met inclusion criteria in this study. Most were young (median age 19.5 years) men (51/59, 88.1\%). Thirty-seven eyes were observed while 24 underwent immediate surgery including six pars plana vitrectomies and three scleral buckles. Compared to initial presentation, BCVA improved in 31/48 (64.6\%) eyes, remained stable in 12/48 eyes (25.0\%), and worsened in 5/48 eyes (10.4\%). Ten patients (16.4\%) achieved a final BCVA of 20/20 with median follow up time of seven months. In a multivariate model, location of sclopetaria in the macula, temporal retina, or immediate orbital foreign body removal predicted poor final BCVA with an area under receiver operating characteristic curve of 0.767.

Conclusions and importance: Traumatic chorioretinitis sclopetaria is rare, but reports have increased dramatically over the past two decades. While pars plana vitrectomy may be required for the management of retinal detachments and non-clearing vitreous hemorrhage, close observation is appropriate in most cases. Visual prognosis is poor with most patients attaining 20/200 vision or worse.

}, issn = {2451-9936}, doi = {10.1016/j.ajoc.2019.02.004}, author = {Ludwig, Cassie A and Shields, Ryan A and Do, Diana V and Moshfeghi, Darius M and Mahajan, Vinit B} } @article {1096, title = {VCAN Canonical Splice Site Mutation is Associated With Vitreoretinal Degeneration and Disrupts an MMP Proteolytic Site.}, journal = {Invest Ophthalmol Vis Sci}, volume = {60}, year = {2019}, month = {2019 Jan 02}, pages = {282-293}, abstract = {

Purpose: To gain insight into the pathophysiology of vitreoretinal degeneration, the clinical course of three family members with Versican Vitreoretinopathy (VVR) is described, and a canonical splice site mutation in the gene encoding for versican (VCAN) protein was biochemically analyzed.

Methods: A retrospective chart review, human eye histopathology, Sanger DNA sequencing, protein structural modeling, and in vitro proteolysis assays were performed.

Results: The proband (II:1), mother (I:2), and younger sibling (II:2) suffered retinal degeneration with foveal sparing and retinal detachments with proliferative vitreoretinopathy, features that were confirmed on histopathologic analysis. All affected members carried a heterozygous adenine to guanine variant (c.4004-2A>G) predicted to result in exon 8 skipping or the deletion of 13 amino acids at the beginning of the GAGβ chain (VCAN p.1335-1347). This deleted region corresponded to a putative MMP cleavage site, validated using fluorescence resonance energy transfer (FRET)-based proteolysis assays. Proteomic network analysis identified 10 interacting partners in the human vitreous and retina linked to retinal detachment and degeneration.

Conclusions: VVR causes significant ocular disease, including retinal detachment and retinal dystrophy. The intronic VCAN mutation removes an MMP cleavage site, which alters versican structure and results in abnormal vitreous modeling. Disruption of a versican protein network may underlie clinicopathologic disease features and point to targeted therapies.

}, issn = {1552-5783}, doi = {10.1167/iovs.18-25624}, author = {Tang, Peter H and Velez, Gabriel and Tsang, Stephen H and Bassuk, Alexander G and Mahajan, Vinit B} } @article {1106, title = {Viral Delivery Systems for CRISPR.}, journal = {Viruses}, volume = {11}, year = {2019}, month = {2019 Jan 04}, abstract = {

The frontiers of precision medicine have been revolutionized by the development of Clustered Regularly-Interspaced Short Palindromic Repeats (CRISPR)/Cas9 as an editing tool. CRISPR/Cas9 has been used to develop animal models, understand disease mechanisms, and validate treatment targets. In addition, it is regarded as an effective tool for genome surgery when combined with viral delivery vectors. In this article, we will explore the various viral mechanisms for delivering CRISPR/Cas9 into tissues and cells, as well as the benefits and drawbacks of each method. We will also review the history and recent development of CRISPR and viral vectors and discuss their applications as a powerful tool in furthering our exploration of disease mechanisms and therapies.

}, issn = {1999-4915}, doi = {10.3390/v11010028}, author = {Xu, Christine L and Ruan, Merry Z C and Mahajan, Vinit B and Tsang, Stephen H} } @article {919, title = {Acute vitreoretinal trauma and inflammation after traumatic brain injury in mice.}, journal = {Ann Clin Transl Neurol}, volume = {5}, year = {2018}, month = {2018 Mar}, pages = {240-251}, abstract = {

Objective: Limited attention has been given to ocular injuries associated with traumatic brain injury (TBI). The retina is an extension of the central nervous system and evaluation of ocular damage may offer a less-invasive approach to gauge TBI severity and response to treatment. We aim to characterize acute changes in the mouse eye after exposure to two different models of TBI to assess the utility of eye damage as a surrogate to brain injury.

Methods: A model of blast TBI (bTBI) using a shock tube was compared to a lateral fluid percussion injury model (LFPI) using fluid pressure applied directly to the brain. Whole eyes were collected from mice 3 days post LFPI and 24 days post bTBI and were evaluated histologically using a hematoxylin and eosin stain.

Results: bTBI mice showed evidence of vitreous detachment in the posterior chamber in addition to vitreous hemorrhage with inflammatory cells. Subretinal hemorrhage, photoreceptor degeneration, and decreased cellularity in the retinal ganglion cell layer was also seen in bTBI mice. In contrast, eyes of LFPI mice showed evidence of anterior uveitis and subcapsular cataracts.

Interpretation: We demonstrated that variations in the type of TBI can result in drastically different phenotypic changes within the eye. As such, molecular and phenotypic changes in the eye following TBI may provide valuable information regarding the mechanism, severity, and ongoing pathophysiology of brain injury. Because vitreous samples are easily obtained, molecular changes within the eye could be utilized as biomarkers of TBI in human patients.

}, issn = {2328-9503}, doi = {10.1002/acn3.523}, author = {Evans, Lucy P and Newell, Elizabeth A and Mahajan, Maryann and Tsang, Stephen H and Ferguson, Polly J and Mahoney, Jolonda and Hue, Christopher D and Vogel, Edward W and Morrison, Barclay and Arancio, Ottavio and Nichols, Russell and Bassuk, Alexander G and Mahajan, Vinit B} } @article {apatoff2018autologous, title = {Autologous stem cell therapy for inherited and acquired retinal disease}, journal = {Regenerative medicine}, year = {2018}, publisher = {Future Medicine}, url = {https://www.ncbi.nlm.nih.gov/pubmed/29360008}, author = {Apatoff, Mary Ben L and Sengillo, Jesse D and White, Eugenia C and Bakhoum, Mathieu F and Bassuk, Alexander G and Mahajan, Vinit B and Tsang, Stephen H} } @article {397, title = {Bevacizumab injection in patients with neovascular age-related macular degeneration increases angiogenic biomarkers}, journal = {Ophthalmology Retina}, volume = {2}, year = {2018}, pages = {31{\textendash}37}, abstract = {

Pubmed link\  https://www.ncbi.nlm.nih.gov/pubmed/29376143

Link to article\ https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5783314/

}, doi = {https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5783314/}, url = {https://www.ncbi.nlm.nih.gov/pubmed/29376143}, author = {Cabral, Thiago and Lima, Luiz H and Mello, Luiz Guilherme M and Polido, J{\'u}lia and Correa, {\'E}verton P and Oshima, Akiyoshi and Duong, Jimmy and Serracarbassa, Pedro and Regatieri, Caio V and Mahajan, Vinit B and others} } @article {907, title = {Caring for Hereditary Childhood Retinal Blindness.}, journal = {Asia Pac J Ophthalmol (Phila)}, year = {2018}, month = {2018 Mar 14}, abstract = {

Inherited retinal diseases (IRDs) are a major cause of incurable familial blindness in the Western world. In the pediatric population, IRDs are a major contributor to the 19 million children worldwide with visual impairment. Unfortunately, the road to the correct diagnosis is often complicated in the pediatric population, as typical diagnostic tools such as fundus examination, electrodiagnostic studies, and other imaging modalities may be difficult to perform in the pediatric patient. In this review, we describe the most significant IRDs with onset during the pediatric years (ie, before the age of 18). We describe the pathogenesis, clinical presentation, and potential treatment of these diseases. In addition, we advocate the use of a pedigree (family medical history), electroretinography, and genetic testing as the 3 most crucial tools for the correct diagnosis of IRDs in the pediatric population.

}, issn = {2162-0989}, doi = {10.22608/APO.201851}, author = {Jauregui, Ruben and Cho, Galaxy Y and Takahashi, Vitor K L and Takiuti, Julia T and Bassuk, Alexander G and Mahajan, Vinit B and Tsang, Stephen H} } @article {978, title = {CRISPR GENOME SURGERY IN THE RETINA IN LIGHT OF OFF-TARGETING.}, journal = {Retina}, volume = {38}, year = {2018}, month = {2018 08}, pages = {1443-1455}, abstract = {

PURPOSE: Recent concerns regarding the clinical utilization of clustered regularly interspaced short palindromic repeats (CRISPR) involve uncertainties about the potential detrimental effects that many arise due to unintended genetic changes, as in off-target mutagenesis, during CRISPR genome surgery. This review gives an overview of off-targeting detection methods and CRISPR{\textquoteright}s place in the clinical setting, specifically in the field of ophthalmology.

RESULTS: As CRISPR utilization in the laboratory setting has increased, knowledge regarding CRISPR mechanisms including its off-target effects has also increased. Although a perfect method for achieving 100\% specificity is yet to be determined, the past few years have seen many developments in off-targeting detection and in increasing efficacy of CRISPR tools.

CONCLUSION: The CRISPR system has high potential to be an invaluable therapeutic tool as it has the ability to modify and repair pathogenic retinal lesions. Although it is not yet a perfect system, with further efforts to improve its specificity and efficacy along with careful screening of off-target mutations, CRISPR-mediated genome surgery potential can become maximized and applied to patients.

}, keywords = {Clustered Regularly Interspaced Short Palindromic Repeats, Gene Editing, Genetic Therapy, Humans, Ophthalmology, Retinal Diseases}, issn = {1539-2864}, doi = {10.1097/IAE.0000000000002197}, author = {Cho, Galaxy Y and Schaefer, Kellie A and Bassuk, Alexander G and Tsang, Stephen H and Mahajan, Vinit B} } @inbook {wu2018crispr, title = {CRISPR Repair Reveals Causative Mutation in a Preclinical Model of Retinitis Pigmentosa: A Brief Methodology}, booktitle = {Retinal Gene Therapy}, year = {2018}, pages = {191{\textendash}205}, publisher = {Springer}, organization = {Springer}, url = {https://www.ncbi.nlm.nih.gov/pubmed/29188514}, author = {Wu, Wen-Hsuan and Tsai, Yi-Ting and Justus, Sally and Cho, Galaxy Y and Sengillo, Jesse D and Xu, Yu and Cabral, Thiago and Lin, Chyuan-Sheng and Bassuk, Alexander G and Mahajan, Vinit B and others} } @article {976, title = {Deferoxamine-induced electronegative ERG responses.}, journal = {Doc Ophthalmol}, year = {2018}, month = {2018 May 16}, abstract = {

PURPOSE: To report a case of deferoxamine-induced retinopathy characterized by electroretinography (ERG), optical coherence tomography angiography (OCT-A), and other multimodal imaging.

METHODS: This is an observational case report of one patient. Full-field ERG was performed. OCT-A, spectral-domain optical coherence tomography (SD-OCT), color fundus photography, and fundus autofluorescence were used to characterize the retinopathy induced by deferoxamine use.

RESULTS: A 64-year-old man with a history of β-thalassemia intermedia presented with worsening visual acuity, nyctalopia, and electronegative ERG. OCT-A revealed atrophy of the choriocapillaris in areas of hypoautofluorescence, corresponding to regions of retinal atrophy. SD-OCT showed disruption of the ellipsoid zone, granular hyperreflective deposits within the retinal pigment epithelium, thinning of the retinal layers, and extensive choroidal sclerosis and atrophy of the retinal pigment epithelium.

CONCLUSION: Deferoxamine-induced retinopathy can manifest with electronegative maximal ERG responses, and OCT-A can be used to detect deferoxamine toxicity.

}, issn = {1573-2622}, doi = {10.1007/s10633-018-9640-3}, author = {Jauregui, Ruben and Park, Karen Sophia and Bassuk, Alexander G and Mahajan, Vinit B and Tsang, Stephen H} } @article {1010, title = {Extracellular superoxide dismutase 3 (SOD3) regulates oxidative stress at the vitreoretinal interface}, journal = {Free Radical Biology and Medicine}, year = {2018}, author = {Wert, Katherine J and Velez, Gabriel and Cross, Madeline R and Wagner, Brett A and Teoh-Fitzgerald, Melissa L and Buettner, Garry R and McAnany, Jason and Olivier, Alicia and Tsang, Stephen H and Harper, Matthew M and others} } @article {1044, title = {Fibrin Glue and Internal Limiting Membrane Abrasion for Optic Disc Pit Maculopathy.}, journal = {Ophthalmic Surg Lasers Imaging Retina}, volume = {49}, year = {2018}, month = {2018 Dec 01}, pages = {e271-e277}, abstract = {

BACKGROUND AND OBJECTIVE: To describe a novel surgical technique using pars plana vitrectomy (PPV), internal limiting membrane (ILM) abrasion, and intravitreal fibrin glue for the treatment of optic disc pit maculopathy.

PATIENTS AND METHODS: Surgical case series technique with scanning electron microscopy (SEM) of human post-mortem eyes.

RESULTS: Using SEM, the authors demonstrate the persistent adherence of vitreous fragments to the optic disc following induction of posterior vitreous detachment in human postmortem eyes. The authors describe a surgical technique using PPV, Tano Diamond Dusted Membrane Scraper for an ILM abrasion, intravitreal fibrin glue (Tisseel), and gas-air exchange to seal optic disc pits. The authors report successful long-term visual and anatomical outcomes in three patients.

CONCLUSIONS: Intravitreal fibrin glue, when combined with ILM abrasion, may be a viable treatment option for optic disc pit maculopathy with good short- and long-term visual acuity outcomes. SEM shows that ILM abrasion removes vitreous fragments, which are persistently adherent and may lead to failure with other interventional techniques. [Ophthalmic Surg Lasers Imaging Retina. 2018;49:e271-e277.].

}, issn = {2325-8179}, doi = {10.3928/23258160-20181203-18}, author = {Almeida, David R P and Chin, Eric K and Arjmand, Parnian and Velez, Gabriel and Evans, Lucy P and Mahajan, Vinit B} } @article {974, title = {Gene therapy and genome surgery in the retina.}, journal = {J Clin Invest}, volume = {128}, year = {2018}, month = {2018 Jun 01}, pages = {2177-2188}, abstract = {

Precision medicine seeks to treat disease with molecular specificity. Advances in genome sequence analysis, gene delivery, and genome surgery have allowed clinician-scientists to treat genetic conditions at the level of their pathology. As a result, progress in treating retinal disease using genetic tools has advanced tremendously over the past several decades. Breakthroughs in gene delivery vectors, both viral and nonviral, have allowed the delivery of genetic payloads in preclinical models of retinal disorders and have paved the way for numerous successful clinical trials. Moreover, the adaptation of CRISPR-Cas systems for genome engineering have enabled the correction of both recessive and dominant pathogenic alleles, expanding the disease-modifying power of gene therapies. Here, we highlight the translational progress of gene therapy and genome editing of several retinal disorders, including RPE65-, CEP290-, and GUY2D-associated Leber congenital amaurosis, as well as choroideremia, achromatopsia, Mer tyrosine kinase- (MERTK-) and RPGR X-linked retinitis pigmentosa, Usher syndrome, neovascular age-related macular degeneration, X-linked retinoschisis, Stargardt disease, and Leber hereditary optic neuropathy.

}, issn = {1558-8238}, doi = {10.1172/JCI120429}, author = {DiCarlo, James E and Mahajan, Vinit B and Tsang, Stephen H} } @article {962, title = {HTRA1, an age-related macular degeneration protease, processes extracellular matrix proteins EFEMP1 and TSP1}, journal = {Aging Cell}, year = {2018}, month = {05/2018}, type = {Original Article }, author = {Michael K Lin and Jin Yang and Chun Wei Hsu and Anuradha Gore and Alexander G Bassuk and Lewis M Brown and Ryan Colligan and Jess D Sengillo and Vinit B Mahajan and Stephen H Tsang} } @article {1008, title = {Missense mutation in SLIT2 associated with congenital myopia, anisometropia, connective tissue abnormalities, and obesity}, journal = {Orphanet journal of rare diseases}, volume = {13}, year = {2018}, pages = {138}, author = {Liu, Katherine Y and Sengillo, Jesse D and Velez, Gabriel and Jauregui, Ruben and Sakai, Lynn Y and Maumenee, Irene H and Bassuk, Alexander G and Mahajan, Vinit B and Tsang, Stephen H} } @article {587, title = {A novel de novo CAPN5 mutation in a patient with inflammatory vitreoretinopathy, hearing loss, and developmental delay}, journal = {Molecular Case Studies}, year = {2018}, pages = {mcs{\textendash}a002519}, author = {Velez, Gabriel and Bassuk, Alexander G and Schaefer, Kellie A and Brooks, Brian and Gakhar, Lokesh and Mahajan, Maryann and Kahn, Philip and Tsang, Stephen H and Ferguson, Polly J and Mahajan, Vinit B} } @article {1020, title = {Personalized Proteomics for Precision Health: Identifying Biomarkers of Vitreoretinal Disease.}, journal = {Transl Vis Sci Technol}, volume = {7}, year = {2018}, month = {2018 Sep}, pages = {12}, abstract = {

Proteomic analysis is an attractive and powerful tool for characterizing the molecular profiles of diseased tissues, such as the vitreous. The complexity of data available for analysis ranges from single (e.g., enzyme-linked immunosorbent assay [ELISA]) to thousands (e.g., mass spectrometry) of proteins, and unlike genomic analysis, which is limited to denoting risk, proteomic methods take snapshots of a diseased vitreous to evaluate ongoing molecular processes in real time. The proteome of diseased ocular tissues was recently characterized, uncovering numerous biomarkers for vitreoretinal diseases and identifying protein targets for approved drugs, allowing for drug repositioning. These biomarkers merit more attention regarding their therapeutic potential and prospective validation, as well as their value as reproducible, sensitive, and specific diagnostic markers.

Translational Relevance: Personalized proteomics offers many advantages over alternative precision-health platforms for the diagnosis and treatment of vitreoretinal diseases, including identification of molecular constituents in the diseased tissue that can be targeted by available drugs.

}, issn = {2164-2591}, doi = {10.1167/tvst.7.5.12}, author = {Velez, Gabriel and Tang, Peter H and Cabral, Thiago and Cho, Galaxy Y and Machlab, Daniel A and Tsang, Stephen H and Bassuk, Alexander G and Mahajan, Vinit B} } @article {1034, title = {PROGRESSION OF SCOTOPIC SINGLE-FLASH ELECTRORETINOGRAPHY IN THE STAGES OF CAPN5 VITREORETINOPATHY.}, journal = {Retin Cases Brief Rep}, year = {2018}, month = {2018 Oct 08}, abstract = {

PURPOSE: To characterize the changes found in the electroretinography (ERG) recordings of patients with autosomal dominant neovascular inflammatory vitreoretinopathy and correlate with clinical stages of the disease.

METHODS: Retrospective chart review. Bright- and dim-flash full-field scotopic, photopic, and 30-Hz flicker ERGs were obtained according to international standards. The scotopic ERGs were further processed to analyze the oscillatory potential. The patient described in the case report underwent full ERG testing; five patients composed the archival case series data and included scotopic ERG recordings.

RESULTS: Stage I autosomal dominant neovascular inflammatory vitreoretinopathy is characterized by a decrease in the b-wave amplitude on scotopic flash ERG and the disappearance of late OPs; however, the a-wave amplitude is normal. In Stage II, attenuation of early OPs and the c-wave are observed in scotopic ERG recordings, but both a- and b-wave amplitudes are unchanged. For patients in Stage III, there is a continued decline of both a- and b-wave amplitudes in scotopic ERG recordings. There was a loss of recordable scotopic ERG response in patients with Stage IV disease.

CONCLUSION: Electroretinography may be valuable in determining optimal timing for therapeutic intervention and response before loss of recordable retinal function in CAPN5 vitreoretinopathy.

}, issn = {1937-1578}, doi = {10.1097/ICB.0000000000000828}, author = {Tang, Peter H and Kinnick, Tyson R and Folk, James C and Mahajan, Maryann and Bassuk, Alexander G and Tsang, Stephen H and Mahajan, Vinit B} } @article {1050, title = {ProSave: an application for restoring quantitative data to manipulated subsets of protein lists.}, journal = {Source Code Biol Med}, volume = {13}, year = {2018}, month = {2018}, pages = {3}, abstract = {

Background: In proteomics studies, liquid chromatography tandem mass spectrometry data (LC-MS/MS) is quantified by spectral counts or by some measure of ion abundance. Downstream comparative analysis of protein content (e.g. Venn diagrams and network analysis) typically does not include this quantitative data and critical information is often lost. To avoid loss of spectral count data in comparative proteomic analyses, it is critical to implement a tool that can rapidly retrieve this information.

Results: We developed ProSave, a free and user-friendly Java-based program that retrieves spectral count data from a curated list of proteins in a large proteomics dataset. ProSave allows for the management of LC-MS/MS datasets and rapidly retrieves spectral count information for a desired list of proteins.

Conclusions: ProSave is open source and freely available at https://github.com/MahajanLab/ProSave. The user manual, implementation notes, and description of methodology and examples are available on the site.

}, issn = {1751-0473}, doi = {10.1186/s13029-018-0070-0}, author = {Machlab, Daniel A and Velez, Gabriel and Bassuk, Alexander G and Mahajan, Vinit B} } @article {849, title = {Proteomic analysis of the human retina reveals region-specific susceptibilities to metabolic-and oxidative stress-related diseases}, journal = {PloS one}, volume = {13}, year = {2018}, pages = {e0193250}, author = {Velez, Gabriel and Machlab, Daniel A and Tang, Peter H and Sun, Yang and Tsang, Stephen H and Bassuk, Alexander G and Mahajan, Vinit B} } @article {1012, title = {Quantitative progression of retinitis pigmentosa by optical coherence tomography angiography}, journal = {Scientific reports}, volume = {8}, year = {2018}, pages = {13130}, author = {Jauregui, Ruben and Park, Karen Sophia and Duong, Jimmy K and Mahajan, Vinit B and Tsang, Stephen H} } @article {1026, title = {Rates of Bone Spicule Pigment Appearance in patients with Retinitis Pigmentosa Sine Pigmento.}, journal = {Am J Ophthalmol}, year = {2018}, month = {2018 Aug 03}, abstract = {

PURPOSE: To determine rate of bone spicule pigmentation appearance in patients with Retinitis Pigmentosa (RP) DESIGN: Retrospective, observational case series.

PARTICIPANTS: A total of 240 patients were analyzed for this study METHODS: A retrospective analysis was conducted at the Electrodiagnostic Clinic at Columbia University Medical Center of all patients{\textquoteright} medical records with a diagnosis of RP between July 2017 and January 2018. The medical records of these patients were analyzed to determine whether the patients presented with pigment migration on their first and last visit to our clinic. Among those who did not have bone spicule at first visit, we examined the time to appearance of newly formed bone spicule. The survival distribution was then estimated using the Kaplan-Meier estimator, where the event is bone spicule and time starts at first visit.

RESULTS: From the 240 patients analyzed, 213 patients presented with intraretinal pigmentation on the first visit to our clinic, and 27 patients presented without intraretinal pigmentation. Of these 27 patients, 10 patients developed pigmentation by their follow-up, with a median time to appearance of bone spicule of 5.4 years from first visit, according to the Kaplan-Meier estimates.

CONCLUSIONS: The timeline of bone spicule pigment appearance in RP has important implications in the natural history characterization of disease progression and application as a biomarker for interventional trials.

}, issn = {1879-1891}, doi = {10.1016/j.ajo.2018.07.036}, author = {Takahashi, Vitor K L and Takiuti, Julia T and Jauregui, Ruben and Mahajan, Vinit B and Tsang, Stephen H} } @article {1048, title = {Review of Ocular Manifestations of Joubert Syndrome.}, journal = {Genes (Basel)}, volume = {9}, year = {2018}, month = {2018 Dec 04}, abstract = {

Joubert syndrome is a group of rare disorders that stem from defects in a sensory organelle, the primary cilia. Affected patients often present with disorders involving multiple organ systems, including the brain, eyes, and kidneys. Common symptoms include breathing abnormalities, mental developmental delays, loss of voluntary muscle coordination, and abnormal eye movements, with a diagnostic "molar tooth" sign observed by magnetic resonance imaging (MRI) of the midbrain. We reviewed the ocular phenotypes that can be found in patients with Joubert syndrome. Ocular motor apraxia is the most frequent (80\% of patients), followed by strabismus (74\%) and nystagmus (72\%). A minority of patients also present with ptosis (43\%), chorioretinal coloboma (30\%), and optic nerve atrophy (22\%). Although mutations in 34 genes have been found to be associated with Joubert syndrome, retinal degeneration has been reported in only 38\% of patients. Mutations in and , genes critical to primary cilia function, have been linked to retinal degeneration. In conclusion, Joubert syndrome is a rare pleiotropic group of disorders with variable ocular presentations.

}, issn = {2073-4425}, doi = {10.3390/genes9120605}, author = {Wang, Stephanie F and Kowal, Tia J and Ning, Ke and Koo, Euna B and Wu, Albert Y and Mahajan, Vinit B and Sun, Yang} } @article {1046, title = {SCAPER-associated nonsyndromic autosomal recessive retinitis pigmentosa.}, journal = {Am J Med Genet A}, year = {2018}, month = {2018 Dec 18}, abstract = {

Mutations in the gene SCAPER (S-phase CyclinA Associated Protein residing in the Endoplasmic Reticulum) have recently been identified as causing syndromic autosomal recessive retinitis pigmentosa with the extraocular manifestations of intellectual disability and attention-deficit/hyperactivity disorder. We present the case of an 11-year-old boy that presented to our clinic with the complaint of decreased night vision. Clinical presentation, family history, and diagnostic imaging were congruent with the diagnosis of autosomal recessive retinitis pigmentosa. Genetic testing of the patient and both parents via whole-exome sequencing revealed the homozygous mutation c.2023-2A>G in SCAPER. Unique to our patient{\textquoteright}s presentation is the absence of intellectual disability and attention-deficit/hyperactivity disorder, suggesting that SCAPER-associated retinitis pigmentosa can also present without systemic manifestations.

}, issn = {1552-4833}, doi = {10.1002/ajmg.a.61001}, author = {Jauregui, Ruben and Thomas, Amanda L and Liechty, Benjamin and Velez, Gabriel and Mahajan, Vinit B and Clark, Lorraine and Tsang, Stephen H} } @article {1030, title = {Translation of CRISPR Genome Surgery to the Bedside for Retinal Diseases.}, journal = {Front Cell Dev Biol}, volume = {6}, year = {2018}, month = {2018}, pages = {46}, abstract = {

In recent years, there has been accelerated growth of clustered regularly interspaced short palindromic repeats (CRISPR) genome surgery techniques. Genome surgery holds promise for diseases for which a cure currently does not exist. In the field of ophthalmology, CRISPR offers possibilities for treating inherited retinal dystrophies. The retina has little regenerative potential, which makes treatment particularly difficult. For such conditions, CRISPR genome surgery methods have shown great potential for therapeutic applications in animal models of retinal dystrophies. Much anticipation surrounds the potential for CRISPR as a therapeutic, as clinical trials of ophthalmic genome surgery are expected to begin as early as 2018. This mini-review summarizes preclinical CRISPR applications in the retina and current CRISPR clinical trials.

}, issn = {2296-634X}, doi = {10.3389/fcell.2018.00046}, author = {Xu, Christine L and Cho, Galaxy Y and Sengillo, Jesse D and Park, Karen S and Mahajan, Vinit B and Tsang, Stephen H} } @article {199, title = {Acanthamoeba Endophthalmitis After Recurrent Keratitis And Nodular Scleritis}, journal = {Retinal Cases and Brief Reports}, volume = {11}, year = {2017}, pages = {180{\textendash}182}, author = {Mammo, Zaid and Almeida, David RP and Cunningham, Matthew A and Chin, Eric K and Mahajan, Vinit B} } @article {schaefer2017calpain, title = {Calpain-5 gene expression in the mouse eye and brain}, journal = {BMC research notes}, volume = {10}, number = {1}, year = {2017}, pages = {602}, publisher = {BioMed Central}, author = {Schaefer, Kellie and Mahajan, Maryann and Gore, Anuradha and Tsang, Stephen H and Bassuk, Alexander G and Mahajan, Vinit B} } @article {cox2017correction, title = {Correction: Recessive coding and regulatory mutations in FBLIM1 underlie the pathogenesis of chronic recurrent multifocal osteomyelitis (CRMO)}, journal = {PloS one}, volume = {12}, number = {7}, year = {2017}, pages = {e0181222}, publisher = {Public Library of Science}, author = {Cox, Allison J and Darbro, Benjamin W and Laxer, Ronald M and Velez, Gabriel and Bing, Xinyu and Finer, Alexis L and Erives, Albert and Mahajan, Vinit B and Bassuk, Alexander G and Ferguson, Polly J} } @article {203, title = {CRISPR-Cas Genome Surgery in Ophthalmology}, journal = {Translational vision science \& technology}, volume = {6}, year = {2017}, pages = {13{\textendash}13}, author = {DiCarlo, James E and Sengillo, Jesse D and Justus, Sally and Cabral, Thiago and Tsang, Stephen H and Mahajan, Vinit B} } @article {525, title = {CRISPR-Mediated Ophthalmic Genome Surgery}, journal = {Current ophthalmology reports}, volume = {5}, year = {2017}, pages = {199{\textendash}206}, author = {Cho, Galaxy Y and Abdulla, Yazeed and Sengillo, Jesse D and Justus, Sally and Schaefer, Kellie A and Bassuk, Alexander G and Tsang, Stephen H and Mahajan, Vinit B} } @article {621, title = {Diagnostic and Therapeutic Challenges.}, journal = {Retina}, year = {2017}, month = {2017 Aug 08}, issn = {1539-2864}, doi = {10.1097/IAE.0000000000001803}, author = {Mishra, Priyadarshini and Kanaujia, Vikas and Sharma, Kumudini and Mahajan, Vinit B and Chin, Eric K} } @article {289, title = {Dissection of Human Retina and RPE-Choroid for Proteomic Analysis.}, journal = {Journal of visualized experiments: JoVE}, year = {2017}, author = {Cabral, Thiago and Toral, Marcus A and Velez, Gabriel and DiCarlo, James E and Gore, Anuradha M and Mahajan, M and Tsang, Stephen H and Bassuk, Alexander G and Mahajan, Vinit B} } @article {625, title = {Efficacy and safety of voretigene neparvovec (AAV2-hRPE65v2) in patients with RPE65-mediated inherited retinal dystrophy: a randomised, controlled, open-label, phase 3 trial.}, journal = {Lancet}, volume = {390}, year = {2017}, month = {2017 Aug 26}, pages = {849-860}, abstract = {

BACKGROUND: Phase 1 studies have shown potential benefit of gene replacement in RPE65-mediated inherited retinal dystrophy. This phase 3 study assessed the efficacy and safety of voretigene neparvovec in participants whose inherited retinal dystrophy would otherwise progress to complete blindness.

METHODS: In this open-label, randomised, controlled phase 3 trial done at two sites in the USA, individuals aged 3 years or older with, in each eye, best corrected visual acuity of 20/60 or worse, or visual field less than 20 degrees in any meridian, or both, with confirmed genetic diagnosis of biallelic RPE65 mutations, sufficient viable retina, and ability to perform standardised multi-luminance mobility testing (MLMT) within the luminance range evaluated, were eligible. Participants were randomly assigned (2:1) to intervention or control using a permuted block design, stratified by age (<10 years and >=10 years) and baseline mobility testing passing level (pass at >=125 lux vs <125 lux). Graders assessing primary outcome were masked to treatment group. Intervention was bilateral, subretinal injection of 1{\textperiodcentered}5 {\texttimes} 10vector genomes of voretigene neparvovec in 0{\textperiodcentered}3 mL total volume. The primary efficacy endpoint was 1-year change in MLMT performance, measuring functional vision at specified light levels. The intention-to-treat (ITT) and modified ITT populations were included in primary and safety analyses. This trial is registered with ClinicalTrials.gov, number NCT00999609, and enrolment is complete.

FINDINGS: Between Nov 15, 2012, and Nov 21, 2013, 31 individuals were enrolled and randomly assigned to intervention (n=21) or control (n=10). One participant from each group withdrew after consent, before intervention, leaving an mITT population of 20 intervention and nine control participants. At 1 year, mean bilateral MLMT change score was 1{\textperiodcentered}8 (SD 1{\textperiodcentered}1) light levels in the intervention group versus 0{\textperiodcentered}2 (1{\textperiodcentered}0) in the control group (difference of 1{\textperiodcentered}6, 95\% CI 0{\textperiodcentered}72-2{\textperiodcentered}41, p=0{\textperiodcentered}0013). 13 (65\%) of 20 intervention participants, but no control participants, passed MLMT at the lowest luminance level tested (1 lux), demonstrating maximum possible improvement. No product-related serious adverse events or deleterious immune responses occurred. Two intervention participants, one with a pre-existing complex seizure disorder and another who experienced oral surgery complications, had serious adverse events unrelated to study participation. Most ocular events were mild in severity.

INTERPRETATION: Voretigene neparvovec gene replacement improved functional vision in RPE65-mediated inherited retinal dystrophy previously medically untreatable.

FUNDING: Spark Therapeutics.

}, issn = {1474-547X}, doi = {10.1016/S0140-6736(17)31868-8}, author = {Russell, Stephen and Bennett, Jean and Wellman, Jennifer A and Chung, Daniel C and Yu, Zi-Fan and Tillman, Amy and Wittes, Janet and Pappas, Julie and Elci, Okan and McCague, Sarah and Cross, Dominique and Marshall, Kathleen A and Walshire, Jean and Kehoe, Taylor L and Reichert, Hannah and Davis, Maria and Raffini, Leslie and George, Lindsey A and Hudson, F Parker and Dingfield, Laura and Zhu, Xiaosong and Haller, Julia A and Sohn, Elliott H and Mahajan, Vinit B and Pfeifer, Wanda and Weckmann, Michelle and Johnson, Chris and Gewaily, Dina and Drack, Arlene and Stone, Edwin and Wachtel, Katie and Simonelli, Francesca and Leroy, Bart P and Wright, J Fraser and High, Katherine A and Maguire, Albert M} } @article {sengillo2017electroretinography, title = {Electroretinography Reveals Difference in Cone Function between Syndromic and Nonsyndromic USH2A Patients}, journal = {Scientific reports}, volume = {7}, number = {1}, year = {2017}, pages = {11170}, publisher = {Nature Publishing Group}, author = {Sengillo, Jesse D and Cabral, Thiago and Schuerch, Kaspar and Duong, Jimmy and Lee, Winston and Boudreault, Katherine and Xu, Yu and Justus, Sally and Sparrow, Janet R and Mahajan, Vinit B and others} } @article {285, title = {Gene Therapy Restores Mfrp and Corrects Axial Eye Length}, journal = {Scientific reports}, volume = {7}, year = {2017}, pages = {16151}, author = {Velez, Gabriel and Tsang, Stephen H and Tsai, Yi-Ting and Hsu, Chun-Wei and Gore, Anuradha and Abdelhakim, Aliaa H and Mahajan, Maryann and Silverman, Ronald H and Sparrow, Janet R and Bassuk, Alexander G and others} } @article {599, title = {
Genome Surgery and Gene Therapy in Retinal Disorders.}, journal = {Yale J Biol Med}, volume = {90}, year = {2017}, month = {2017 Dec}, pages = {523-532}, abstract = {

The emergence of genome surgery techniques like the clustered regularly interspaced short palindromic repeats (CRISPR) editing technology has given researchers a powerful tool for precisely introducing targeted changes within the genome. New modifications to the CRISPR-Cas system have been made since its recent discovery, such as high-fidelity Cas9 variants to reduce off-target effects and transcriptional activation/silencing with CRISPRa/CRISPRi. The applications of CRISPR-Cas and gene therapy in ophthalmic diseases have been necessary and fruitful, especially given the impact of blinding diseases on society and the large number of monogenic disorders of the eye. This review discusses the impact that CRISPR-Cas has had on furthering our understanding of disease mechanisms and potential therapies for inherited eye diseases. Furthermore, we explore a brief overview of recent and ongoing gene therapy clinical trials in retinal diseases, and conclude with the implications of genome surgery on the outlook of future therapeutic interventions.

}, issn = {1551-4056}, author = {Chan, Lawrence and Mahajan, Vinit B and Tsang, Stephen H} } @article {623, title = {Limbal Trocar-Cannulas for Complex Vitrectomy Surgery.}, journal = {Retina}, year = {2017}, month = {2017 Jul 21}, issn = {1539-2864}, doi = {10.1097/IAE.0000000000001781}, author = {Mears, Katrina A and Mahajan, Vinit B} } @article {287, title = {Ocular hypertension after intravitreal dexamethasone (Ozurdex) sustained-release implant}, journal = {Retina}, volume = {37}, year = {2017}, pages = {1345{\textendash}1351}, author = {Chin, Eric K and Almeida, David RP and Velez, Gabriel and Xu, Kunyong and Peraire, Maria and Corbella, Maria and Elshatory, Yasser M and Kwon, Young H and Gehrs, Karen M and Boldt, H Culver and others} } @article {269, title = {Personalized proteomics in proliferative vitreoretinopathy implicate hematopoietic cell recruitment and mTOR as a therapeutic target}, journal = {American journal of ophthalmology}, year = {2017}, author = {Roybal, C Nathaniel and Velez, Gabriel and Toral, Marcus A and Tsang, Stephen H and Bassuk, Alexander G and Mahajan, Vinit B} } @article {293, title = {Proteomic analysis of elevated intraocular pressure with retinal detachment}, journal = {American journal of ophthalmology case reports}, volume = {5}, year = {2017}, pages = {107{\textendash}110}, author = {Velez, Gabriel and Roybal, C Nathaniel and Binkley, Elaine and Bassuk, Alexander G and Tsang, Stephen H and Mahajan, Vinit B} } @article {635, title = {Recessive coding and regulatory mutations in FBLIM1 underlie the pathogenesis of chronic recurrent multifocal osteomyelitis (CRMO).}, journal = {PLoS One}, volume = {12}, year = {2017}, month = {2017}, pages = {e0169687}, abstract = {

Chronic recurrent multifocal osteomyelitis (CRMO) is a rare, pediatric, autoinflammatory disease characterized by bone pain due to sterile osteomyelitis, and is often accompanied by psoriasis or inflammatory bowel disease. There are two syndromic forms of CRMO, Majeed syndrome and DIRA, for which the genetic cause is known. However, for the majority of cases of CRMO, the genetic basis is unknown. Via whole-exome sequencing, we detected a homozygous mutation in the filamin-binding domain of FBLIM1 in an affected child with consanguineous parents. Microarray analysis of bone marrow macrophages from the CRMO murine model (cmo) determined that the Fblim1 ortholog is the most differentially expressed gene, downregulated over 20-fold in the cmo mouse. We sequenced FBLIM1 in 96 CRMO subjects and found a second proband with a novel frameshift mutation in exon 6 and a rare regulatory variant. In SaOS2 cells, overexpressing the regulatory mutation showed the flanking region acts as an enhancer, and the mutation ablates enhancer activity. Our data implicate FBLIM1 in the pathogenesis of sterile bone inflammation and our findings suggest CRMO is a disorder of chronic inflammation and imbalanced bone remodeling.

}, keywords = {Amino Acid Sequence, Animals, Cell Adhesion Molecules, Cell Line, Tumor, Child, Cytoskeletal Proteins, Female, Genes, Recessive, Humans, Interleukin-10, Mice, Mutation, Osteomyelitis, Promoter Regions, Genetic, Sequence Homology, Amino Acid}, issn = {1932-6203}, doi = {10.1371/journal.pone.0169687}, author = {Cox, Allison J and Darbro, Benjamin W and Laxer, Ronald M and Velez, Gabriel and Bing, Xinyu and Finer, Alexis L and Erives, Albert and Mahajan, Vinit B and Bassuk, Alexander G and Ferguson, Polly J} } @article {cabral2017retinal, title = {Retinal and choroidal angiogenesis: a review of new targets}, journal = {International journal of retina and vitreous}, volume = {3}, number = {1}, year = {2017}, pages = {31}, publisher = {BioMed Central}, author = {Cabral, Thiago and Mello, Luiz Guilherme M and Lima, Luiz H and Polido, J{\'u}lia and Regatieri, Caio V and Belfort, Rubens and Mahajan, Vinit B} } @article {cabral2017retrospective, title = {Retrospective Analysis of Structural Disease Progression in Retinitis Pigmentosa Utilizing Multimodal Imaging}, journal = {Scientific reports}, volume = {7}, number = {1}, year = {2017}, pages = {10347}, publisher = {Nature Publishing Group}, author = {Cabral, Thiago and Sengillo, Jesse D and Duong, Jimmy K and Justus, Sally and Boudreault, Katherine and Schuerch, Kaspar and Belfort, Rubens and Mahajan, Vinit B and Sparrow, Janet R and Tsang, Stephen H} } @article {295, title = {Structural modeling of a novel SLC38A8 mutation that causes foveal hypoplasia}, journal = {Molecular genetics \& genomic medicine}, volume = {5}, year = {2017}, pages = {202{\textendash}209}, url = {https://www.ncbi.nlm.nih.gov/pubmed/28546991}, author = {Toral, Marcus A and Velez, Gabriel and Boudreault, Katherine and Schaefer, Kellie A and Xu, Yu and Saffra, Norman and Bassuk, Alexander G and Tsang, Stephen H and Mahajan, Vinit B} } @article {291, title = {Therapeutic drug repositioning using personalized proteomics of liquid biopsies}, journal = {JCI insight}, volume = {2}, year = {2017}, author = {Velez, Gabriel and Bassuk, Alexander G and Colgan, Diana and Tsang, Stephen H and Mahajan, Vinit B} } @article {schaefer2017unexpected, title = {Unexpected mutations after CRISPR-Cas9 editing in vivo}, journal = {Nature methods}, volume = {14}, number = {6}, year = {2017}, pages = {547{\textendash}548}, publisher = {Nature Research}, author = {Schaefer, Kellie A and Wu, Wen-Hsuan and Colgan, Diana F and Tsang, Stephen H and Bassuk, Alexander G and Mahajan, Vinit B} } @article {671, title = {Autism Linked to Increased Oncogene Mutations but Decreased Cancer Rate.}, journal = {PLoS One}, volume = {11}, year = {2016}, month = {2016}, pages = {e0149041}, abstract = {

Autism spectrum disorder (ASD) is one phenotypic aspect of many monogenic, hereditary cancer syndromes. Pleiotropic effects of cancer genes on the autism phenotype could lead to repurposing of oncology medications to treat this increasingly prevalent neurodevelopmental condition for which there is currently no treatment. To explore this hypothesis we sought to discover whether autistic patients more often have rare coding, single-nucleotide variants within tumor suppressor and oncogenes and whether autistic patients are more often diagnosed with neoplasms. Exome-sequencing data from the ARRA Autism Sequencing Collaboration was compared to that of a control cohort from the Exome Variant Server database revealing that rare, coding variants within oncogenes were enriched for in the ARRA ASD cohort (p<1.0 x 10(-8)). In contrast, variants were not significantly enriched in tumor suppressor genes. Phenotypically, children and adults with ASD exhibited a protective effect against cancer, with a frequency of 1.3\% vs. 3.9\% (p<0.001), but the protective effect decreased with age. The odds ratio of neoplasm for those with ASD relative to controls was 0.06 (95\% CI: 0.02, 0.19; p<0.0001) in the 0 to 14 age group; 0.35 (95\% CI: 0.14, 0.87; p = 0.024) in the 15 to 29 age group; 0.41 (95\% CI: 0.15, 1.17; p = 0.095) in the 30 to 54 age group; and 0.49 (95\% CI: 0.14, 1.74; p = 0.267) in those 55 and older. Both males and females demonstrated the protective effect. These findings suggest that defects in cellular proliferation, and potentially senescence, might influence both autism and neoplasm, and already approved drugs targeting oncogenic pathways might also have therapeutic value for treating autism.

}, keywords = {Adolescent, Adult, Autism Spectrum Disorder, Child, Child, Preschool, Female, Genes, Tumor Suppressor, Genetic Predisposition to Disease, Humans, Infant, Male, Middle Aged, Mutation, Neoplasms, Oncogenes, Prevalence, Young Adult}, issn = {1932-6203}, doi = {10.1371/journal.pone.0149041}, author = {Darbro, Benjamin W and Singh, Rohini and Zimmerman, M Bridget and Mahajan, Vinit B and Bassuk, Alexander G} } @article {659, title = {BESTROPHIN1 mutations cause defective chloride conductance in patient stem cell-derived RPE.}, journal = {Hum Mol Genet}, volume = {25}, year = {2016}, month = {2016 07 01}, pages = {2672-2680}, abstract = {

Bestrophin1 (BEST1) is expressed in human retinal pigment epithelium (RPE) and mutations in the BEST1 gene commonly cause retinal dysfunction and macular degeneration. BEST1 is presumed to assemble into a calcium-activated chloride channel and be involved in chloride transport but there is no direct evidence in live human RPE cells to support this idea. To test whether BEST1 functions as a chloride channel in living tissue, BEST1-mutant RPE (R218H, L234P, A243T) were generated from patient-derived induced pluripotent stem cells and compared with wild-type RPE in a retinal environment, using a biosensor that visualizes calcium-induced chloride ion flux in the cell. Calcium stimulation elicited chloride ion export in normal RPE but not in RPE derived from three patients with BEST1 mutations. These data, along with three-dimensional modeling, provide evidence that BEST1 assembles into a key calcium-sensing chloride channel in human RPE.

}, keywords = {Bestrophins, Calcium Signaling, Chloride Channels, Chlorides, Eye Proteins, Humans, Induced Pluripotent Stem Cells, Mutation, Retinal Pigment Epithelium, Vitelliform Macular Dystrophy}, issn = {1460-2083}, doi = {10.1093/hmg/ddw126}, author = {Moshfegh, Yasmin and Velez, Gabriel and Li, Yao and Bassuk, Alexander G and Mahajan, Vinit B and Tsang, Stephen H} } @article {663, title = {Calpain-5 Expression in the Retina Localizes to Photoreceptor Synapses.}, journal = {Invest Ophthalmol Vis Sci}, volume = {57}, year = {2016}, month = {2016 05 01}, pages = {2509-21}, abstract = {

PURPOSE: We characterize calpain-5 (CAPN5) expression in retinal and neuronal subcellular compartments.

METHODS: CAPN5 gene variants were classified using the exome variant server, and RNA-sequencing was used to compare expression of CAPN5 mRNA in the mouse and human retina and in retinoblastoma cells. Expression of CAPN5 protein was ascertained in humans and mice in silico, in mouse retina by immunohistochemistry, and in neuronal cancer cell lines and fractionated central nervous system tissue extracts by Western analysis with eight antibodies targeting different CAPN5 regions.

RESULTS: Most CAPN5 genetic variation occurs outside its protease core; and searches of cancer and epilepsy/autism genetic databases found no variants similar to hyperactivating retinal disease alleles. The mouse retina expressed one transcript for CAPN5 plus those of nine other calpains, similar to the human retina. In Y79 retinoblastoma cells, the level of CAPN5 transcript was very low. Immunohistochemistry detected CAPN5 expression in the inner and outer nuclear layers and at synapses in the outer plexiform layer. Western analysis of fractionated retinal extracts confirmed CAPN5 synapse localization. Western blots of fractionated brain neuronal extracts revealed distinct subcellular patterns and the potential presence of autoproteolytic CAPN5 domains.

CONCLUSIONS: CAPN5 is moderately expressed in the retina and, despite higher expression in other tissues, hyperactive disease mutants of CAPN5 only manifest as eye disease. At the cellular level, CAPN5 is expressed in several different functional compartments. CAPN5 localization at the photoreceptor synapse and with mitochondria explains the neural circuitry phenotype in human CAPN5 disease alleles.

}, keywords = {Animals, Blotting, Western, Calpain, Cattle, Female, Gene Expression Regulation, Neoplastic, Humans, Immunohistochemistry, Male, Mice, Neoplasms, Experimental, Photoreceptor Cells, Retina, Retinal Neoplasms, Retinoblastoma, RNA, Neoplasm, Synapses, Tumor Cells, Cultured}, issn = {1552-5783}, doi = {10.1167/iovs.15-18680}, author = {Schaefer, Kellie A and Toral, Marcus A and Velez, Gabriel and Cox, Allison J and Baker, Sheila A and Borcherding, Nicholas C and Colgan, Diana F and Bondada, Vimala and Mashburn, Charles B and Yu, Chen-Guang and Geddes, James W and Tsang, Stephen H and Bassuk, Alexander G and Mahajan, Vinit B} } @article {yang2016catenin, title = {Catenin delta-1 (CTNND1) phosphorylation controls the mesenchymal to epithelial transition in astrocytic tumors}, journal = {Human molecular genetics}, volume = {25}, number = {19}, year = {2016}, pages = {4201{\textendash}4210}, publisher = {Oxford University Press}, author = {Yang, Jin and Bassuk, Alexander G and Merl-Pham, Juliane and Hsu, Chun-Wei and Colgan, Diana F and Li, Xiaorong and Au, Kit Sing and Zhang, Lijuan and Smemo, Scott and Justus, Sally and others} } @article {673, title = {Chronic Recurrent Pseudophakic Endophthalmitis.}, journal = {JAMA Ophthalmol}, volume = {134}, year = {2016}, month = {2016 Apr}, pages = {455-6}, keywords = {Aged, 80 and over, Chronic Disease, Combined Modality Therapy, Drug Therapy, Combination, Endophthalmitis, Female, Follow-Up Studies, Humans, Mycobacterium chelonae, Mycobacterium Infections, Nontuberculous, Recurrence, Risk Assessment, Slit Lamp, Treatment Outcome, Vancomycin, Vitrectomy}, issn = {2168-6173}, doi = {10.1001/jamaophthalmol.2015.3638}, author = {Chin, Eric K and Almeida, David R P and Mahajan, Vinit B} } @article {645, title = {COMBINED VITRECTOMY AND INTRAVITREAL DEXAMETHASONE (OZURDEX) SUSTAINED-RELEASE IMPLANT.}, journal = {Retina}, volume = {36}, year = {2016}, month = {2016 Nov}, pages = {2087-2092}, abstract = {

PURPOSE: To evaluate the safety and efficacy of combining intravitreal dexamethasone implantation (Ozurdex) with pars plana vitrectomy (PPV).

METHODS: A retrospective review was conducted on cases where Ozurdex injection was performed in the operating room in conjunction with pars plana vitrectomy. Our primary outcome measure was the presence of surgical complications in the perioperative and 3-month postoperative window. We also measured visual acuity, intraocular pressure (IOP), and macular edema at baseline, one, and 3 months after surgery.

RESULTS: Fifteen eyes in 14 cases were reviewed. There were no complications intraoperatively or at 1-month postoperatively. Two patients (2 eyes) with prior retinal detachment developed proliferative vitreoretinopathy and redetachment at 3 months. Visual acuity improved in 7 of 15 eyes, and an average improvement of 2 lines was achieved for the entire cohort. There was no overall change in intraocular pressure although 1 patient developed an increase in intraocular pressure \>5 mmHg. Five of 9 patients with baseline macular edema experienced improvement or resolution at 3 months.

CONCLUSION: Intraoperative Ozurdex in combination with PPV may be safe and effective in treating macular edema caused by many different underlying diseases.

}, keywords = {Adult, Aged, Aged, 80 and over, Combined Modality Therapy, Dexamethasone, Drug Implants, Female, Glucocorticoids, Humans, Intraocular Pressure, Intravitreal Injections, Macular Edema, Male, Middle Aged, Retinal Vein Occlusion, Retrospective Studies, Tomography, Optical Coherence, Uveitis, Posterior, Visual Acuity, Vitrectomy, Wet Macular Degeneration}, issn = {1539-2864}, doi = {10.1097/IAE.0000000000001063}, author = {Zheng, Andrew and Chin, Eric K and Almeida, David R P and Tsang, Stephen H and Mahajan, Vinit B} } @article {675, title = {Comparison of microbiology and visual outcomes of patients undergoing small-gauge and 20-gauge vitrectomy for endophthalmitis.}, journal = {Clin Ophthalmol}, volume = {10}, year = {2016}, month = {2016}, pages = {167-72}, abstract = {

BACKGROUND: The role of pars plana vitrectomy (PPV) for endophthalmitis has evolved over recent decades but the literature is lacking on comparisons between small-gauge and 20-gauge vitrectomy.

OBJECTIVE: To evaluate evolving etiological and microbiological trends in patients undergoing vitrectomy for endophthalmitis and to compare culture-positive rates and visual outcomes between small-gauge (23- and 25-gauge) and 20-gauge instrumentation during vitrectomy for endophthalmitis.

METHODS: Ten-year retrospective comparative case series and prospective laboratory in vitro testing. Tertiary care academic referral center. Patients who underwent PPV for endophthalmitis between 2003 and 2013. Vitreous biopsies were obtained in all cases. The effect of vitrectomy gauge (20-, 23-, and 25-gauge) and vitreous cutting rate (1,500 and 5,000 cuts per minute) on the viability of bacterial culture was evaluated in an in vitro prospective laboratory investigation.

MAIN OUTCOME MEASURES: Comparison of etiology, microbiology culture-positive rates, and visual outcomes between small-gauge and 20-gauge instrumentation in patients undergoing PPV for infectious endophthalmitis.

RESULTS: A total of 61 cases of vitrectomy for endophthalmitis were identified over a 10-year period; of these, 34 were treated with small-gauge (23- and 25-gauge) vitrectomy and 27 were treated with 20-gauge vitrectomy. In the small-gauge group, 12 cases (35.3\%) yielded culture-positive results versus 20 cases (74.1\%) with culture positivity in the 20-gauge cohort (P=0.002). The most common cause of endophthalmitis was cataract surgery and the most frequently identified organism was coagulase-negative Staphylococci in both groups. There was no significant difference in mean postoperative visual acuities between groups (P=0.33). Etiological trends indicate an increase in endophthalmitis due to intravitreal injection in the small-gauge group (n=9) compared to the 20-gauge group (n=3) (P=0.001). In vitro laboratory testing revealed no significant difference in rates of culture growth for different vitrectomy gauge sizes or vitreous cutting speeds.

CONCLUSION AND RELEVANCE: Small-gauge vitrectomy for endophthalmitis yields final visual outcomes comparable to 20-gauge instrumentation. A significant difference in culture-positive rates was observed between small-gauge and 20-gauge instrumentation for vitrectomy in endophthalmitis; however, laboratory testing indicates this is not related to either vitreous gauge size or cutter speed. Intravitreal injections are emerging as a common etiology of vitrectomy for endophthalmitis.

}, issn = {1177-5467}, doi = {10.2147/OPTH.S95906}, author = {Almeida, David RP and Chin, Eric K and Shah, Shaival S and Bakall, Benjamin and Gehrs, Karen M and Boldt, H Culver and Russell, Stephen R and Folk, James C and Mahajan, Vinit B} } @article {667, title = {Complication of Autologous Stem Cell Transplantation in Retinitis Pigmentosa.}, journal = {JAMA Ophthalmol}, volume = {134}, year = {2016}, month = {2016 Jun 01}, pages = {711-2}, issn = {2168-6173}, doi = {10.1001/jamaophthalmol.2016.0803}, author = {Boudreault, Katherine and Justus, Sally and Lee, Winston and Mahajan, Vinit B and Tsang, Stephen H} } @article {655, title = {CRISPR Repair Reveals Causative Mutation in a Preclinical Model of Retinitis Pigmentosa.}, journal = {Mol Ther}, volume = {24}, year = {2016}, month = {2016 08}, pages = {1388-94}, abstract = {

Massive parallel sequencing enables identification of numerous genetic variants in mutant organisms, but determining pathogenicity of any one mutation can be daunting. The most commonly studied preclinical model of retinitis pigmentosa called the "rodless" (rd1) mouse is homozygous for two mutations: a nonsense point mutation (Y347X) and an intronic insertion of a leukemia virus (Xmv-28). Distinguishing which mutation causes retinal degeneration is still under debate nearly a century after the discovery of this model organism. Here, we performed gene editing using the CRISPR/Cas9 system and demonstrated that the Y347X mutation is the causative variant of disease. Genome editing in the first generation produced animals that were mosaic for the corrected allele but still showed neurofunction preservation despite low repair frequencies. Furthermore, second-generation CRISPR-repaired mice showed an even more robust rescue and amelioration of the disease. This predicts excellent outcomes for gene editing in diseased human tissue, as Pde6b, the mutated gene in rd1 mice, has an orthologous intron-exon relationship comparable with the human PDE6B gene. Not only do these findings resolve the debate surrounding the source of neurodegeneration in the rd1 model, but they also provide the first example of homology-directed recombination-mediated gene correction in the visual system.

}, keywords = {Animals, Clustered Regularly Interspaced Short Palindromic Repeats, CRISPR-Cas Systems, Cyclic Nucleotide Phosphodiesterases, Type 6, Disease Models, Animal, DNA Repair, Electroretinography, Exons, Gene Editing, Genetic Loci, Homologous Recombination, Mice, Mice, Transgenic, Mutation, Photoreceptor Cells, Vertebrate, Retinal Degeneration, Retinitis Pigmentosa, RNA, Guide}, issn = {1525-0024}, doi = {10.1038/mt.2016.107}, author = {Wu, Wen-Hsuan and Tsai, Yi-Ting and Justus, Sally and Lee, Ting-Ting and Zhang, Lijuan and Lin, Chyuan-Sheng and Bassuk, Alexander G and Mahajan, Vinit B and Tsang, Stephen H} } @article {661, title = {Delayed fungal endophthalmitis secondary to.}, journal = {Am J Ophthalmol Case Rep}, volume = {3}, year = {2016}, month = {2016 Oct}, pages = {1-4}, abstract = {

Purpose: To describe a case of fungal endophthalmitis secondary toafter cataract surgery.

Observations: This case showed delayed and recalcitrant fungal endophthalmitis secondary todespite treatment with pars plana vitrectomy, intravitreal antifungal therapy, and systemic antifungals.

Conclusions and importance: -associated endophthalmitis should be considered in the differential diagnosis of delayed post-cataract endophthalmitis, especially in tropical or subtropical geographical areas. Awareness and early identification, timely removal of the nidi of sequestration, and prolonged antifungal treatments are important for the eradication of-associated endophthalmitis.

}, issn = {2451-9936}, doi = {10.1016/j.ajoc.2016.05.001}, author = {Xu, Kunyong and Almeida, David R P and Chin, Eric K and Mahajan, Vinit B} } @article {683, title = {ELEVATED INTRAOCULAR PRESSURE FOLLOWING PARS PLANA VITRECTOMY DUE TO TRAPPED GAS IN THE POSTERIOR CHAMBER.}, journal = {Retin Cases Brief Rep}, volume = {10}, year = {2016}, month = {2016 Fall}, pages = {334-7}, abstract = {

PURPOSE: Elevated intraocular pressure is relatively common following pars plana vitrectomy and intraocular gas tamponade. We discuss a series of patients who experienced elevated intraocular pressure from pupillary block and angle closure secondary to trapped gas in the posterior chamber.

METHODS: Case series.

RESULTS: Case 1 is a patient who underwent pars plana vitrectomy for retinal detachment repair. The intraocular pressure was elevated on postoperative Day 3 because of trapped gas in the posterior chamber, and it did not lower with prone positioning, maximal medical therapy, and laser peripheral iridotomies. Aspiration of the trapped gas was done with the patient sitting upright using a 27-gauge needle at the limbus, which was curative. Case 2 provides anterior-segment optical coherence tomography images that confirmed the location of the trapped gas resulting in angle closure. Case 3 demonstrates the unfortunate sequelae of a central retinal artery occlusion following delayed recognition of this entity. Case 4 highlights the challenges encountered when migratory gas is also seen elsewhere in the eye.

CONCLUSION: Clinicians should be aware of elevated intraocular pressure secondary to trapped gas in the posterior chamber, which may be recalcitrant to medical therapy. Aspiration of the trapped gas can alleviate both pupillary block and angle closure without compromising the gas tamponade.

}, keywords = {Aged, Endotamponade, Female, Gases, Humans, Intraocular Pressure, Male, Middle Aged, Ocular Hypertension, Posterior Eye Segment, Vitrectomy}, issn = {1937-1578}, doi = {10.1097/ICB.0000000000000256}, author = {Chin, Eric K and Almeida, David R P and Strohbehn, Austin L and Mahajan, Vinit B and Russell, Stephen R and Folk, James C} } @inbook {justus2016genome, title = {Genome Editing in the Retina: A Case Study in CRISPR for a Patient-Specific Autosomal Dominant Retinitis Pigmentosa Model}, booktitle = {Genome Editing}, year = {2016}, pages = {149{\textendash}162}, publisher = {Springer}, organization = {Springer}, author = {Justus, Sally and Zheng, Andrew and Tsai, Yi-Ting and Wu, Wen-Hsuan and Hsu, Chun-Wei and Wu, Wei-Pu and Bassuk, Alexander G and Mahajan, Vinit B and Tsang, Stephen H} } @article {643, title = {Intravitreal Foscarnet With Concurrent Silicone Oil Tamponade for Rhegmatogenous Retinal Detachment Secondary to Viral Retinitis.}, journal = {Retina}, volume = {36}, year = {2016}, month = {2016 Nov}, pages = {2236-2238}, keywords = {Antiviral Agents, Combined Modality Therapy, Endotamponade, Eye Infections, Viral, Foscarnet, Humans, Intravitreal Injections, Retinal Detachment, Retinitis, Silicone Oils, Vitrectomy}, issn = {1539-2864}, doi = {10.1097/IAE.0000000000001174}, author = {Xu, Kunyong and Chin, Eric K and Mahajan, Vinit B and Almeida, David R P} } @article {watson2016long, title = {Long term follow-up of Ocular Histoplasmosis in the Anti-VEGF Era}, journal = {Investigative Ophthalmology \& Visual Science}, volume = {57}, number = {12}, year = {2016}, pages = {4513{\textendash}4513}, publisher = {The Association for Research in Vision and Ophthalmology}, author = {Watson, Jessica Susan and Carey, Andrew and Binkley, Elaine Michele and Boldt, H Culver and Folk, James C and Sohn, Elliott H and Mahajan, Vinit B and Gehrs, Karen M and Russell, Stephen R} } @article {647, title = {Management of Pediatric Aphakic Glaucoma With Vitrectomy and Tube Shunts.}, journal = {J Pediatr Ophthalmol Strabismus}, volume = {53}, year = {2016}, month = {2016 Nov 01}, pages = {339-343}, abstract = {

PURPOSE: To review the impact of vitrectomy and tube shunts on mean intraocular pressure (IOP) and number of glaucoma medications in pediatric aphakic glaucoma.

METHODS: A retrospective review of pediatric patients who underwent combined vitrectomy and glaucoma tube shunt surgery for aphakic glaucoma was conducted. Inclusion criteria were: age 18 years or younger, diagnosis of aphakic glaucoma, preoperative IOP data, and postoperative IOP data for at least 6 months. Mean IOP lowering at 1 year, number of glaucoma medications at 1 year, and surgical complications, including tube occlusion in the postoperative period, were noted.

RESULTS: The mean \± standard deviation preoperative IOP was 33.9 \± 10.6 mm Hg (range: 18 to 57 mm Hg) with a mean of three topical IOP-lowering medications. A total of 5 (36\%) Ahmed and 9 (64\%) Baerveldt tube shunts were placed. One of the Baerveldt tube shunt procedures was combined with revision of a traumatically dislocated tube. The mean IOP at 12 months postoperatively was 16.6 \± 5.8 mm Hg (range: 6 to 28 mm Hg; P \< .01, t = 3.74, df = 13) with a mean of 2.3 glaucoma medications. There were no cases of tube occlusion, corneal decompensation, endophthalmitis, or retinal detachment over the 12 months of follow-up.

CONCLUSIONS: Combined vitrectomy and placement of a glaucoma tube shunt can be safe and effective in lowering IOP based on mean IOP values and number of glaucoma medications at 1 year. [J Pediatr Ophthalmol Strabismus. 2016;53(6):339-343.].

}, keywords = {Adolescent, Aphakia, Postcataract, Cataract, Cataract Extraction, Child, Child, Preschool, Female, Glaucoma, Glaucoma Drainage Implants, Humans, Infant, Intraocular Pressure, Male, Retrospective Studies, Visual Acuity, Vitrectomy}, issn = {1938-2405}, doi = {10.3928/01913913-20160818-01}, author = {Elshatory, Yasser M and Gauger, Elizabeth H and Kwon, Young H and Alward, Wallace L M and Boldt, H Culver and Russell, Stephen R and Mahajan, Vinit B} } @article {657, title = {Neuroretinal hypoxic signaling in a new preclinical murine model for proliferative diabetic retinopathy.}, journal = {Signal Transduct Target Ther}, volume = {1}, year = {2016}, month = {2016}, abstract = {

Diabetic retinopathy (DR) affects approximately one-third of diabetic patients and, if left untreated, progresses to proliferative DR (PDR) with associated vitreous hemorrhage, retinal detachment, iris neovascularization, glaucoma and irreversible blindness. In vitreous samples of human patients with PDR, we found elevated levels of hypoxia inducible factor 1 alpha (HIF1α). HIFs are transcription factors that promote hypoxia adaptation and have important functional roles in a wide range of ischemic and inflammatory diseases. To recreate the human PDR phenotype for a preclinical animal model, we generated a mouse with neuroretinal-specific loss of the von Hippel Lindau tumor suppressor protein, a protein that targets HIF1α for ubiquitination. We found that the neuroretinal cells in these mice overexpressed HIF1α and developed severe, irreversible ischemic retinopathy that has features of human PDR. Rapid progression of retinopathy in these mutant mice should facilitate the evaluation of therapeutic agents for ischemic and inflammatory blinding disorders. In addition, this model system can be used to manipulate the modulation of the hypoxia signaling pathways, for the treatment of non-ocular ischemic and inflammatory disorders.

}, issn = {2095-9907}, doi = {10.1038/sigtrans.2016.5}, author = {Wert, Katherine J and Mahajan, Vinit B and Zhang, Lijuan and Yan, Yuanqing and Li, Yao and Tosi, Joaquin and Hsu, Chun Wei and Nagasaki, Takayuki and Janisch, Kerstin M and Grant, Maria B and Mahajan, Maryann and Bassuk, Alexander G and Tsang, Stephen H} } @article {bassuk2016precision, title = {Precision medicine: genetic repair of retinitis pigmentosa in patient-derived stem cells}, journal = {Scientific reports}, volume = {6}, year = {2016}, pages = {19969}, publisher = {Nature Publishing Group}, author = {Bassuk, Alexander G and Zheng, Andrew and Li, Yao and Tsang, Stephen H and Mahajan, Vinit B} } @article {677, title = {Precision Medicine: Personalized Proteomics for the Diagnosis and Treatment of Idiopathic Inflammatory Disease.}, journal = {JAMA Ophthalmol}, volume = {134}, year = {2016}, month = {2016 Apr}, pages = {444-8}, abstract = {

IMPORTANCE: To better characterize posterior uveitis, vitreous samples from 15 patients were subjected to antibody arrays, and the expression levels of 200 human cytokines were evaluated. Expression was analyzed by 1-way analysis of variance (significance at P < .01), unsupervised cluster algorithm, and pathway analysis.

OBSERVATIONS: Unbiased clustering of patients, based on their cytokine expression profile, suggested that particular protein networks and molecular pathways are altered in various forms of uveitis. Expression of interleukin 23 (IL-23), IL-1 receptor I (IL-1RI), IL-17R, tissue inhibitors of metalloproteinase 1 and 2 (TIMP-1 and TIMP-2), insulinlike growth factor-binding protein 2 (IGFBP-2), nerve growth factor (b-NGF), platelet-derived growth factor receptor β polypeptide (PDGFRb), bone morphogenic protein 4 (BMP-4), and stem cell factor (SCF) constituted a common cytokine signature in the vitreous of patients with uveitis. In 1 patient with progressive, idiopathic visual loss, this last-line analysis implicated retinal autoimmunity, a diagnosis that was validated when her serum sample was found to contain antibodies to S-arrestin, a retinal protein and potent cause of autoimmune retinal degeneration.

CONCLUSIONS AND RELEVANCE: The analysis identifies a common cytokine signature for posterior uveitis and guides the diagnosis of a patient with idiopathic uveitis. Personalized treatment reversed the visual loss, illustrating how proteomic tools may individualize therapy.

}, keywords = {Adrenal Cortex Hormones, Adult, Analysis of Variance, Case-Control Studies, Cytokines, Follow-Up Studies, Humans, Immunosuppressive Agents, Male, Middle Aged, Precision Medicine, Proteomics, Reference Values, Risk Assessment, Severity of Illness Index, Treatment Outcome, Uveitis, Visual Acuity}, issn = {2168-6173}, doi = {10.1001/jamaophthalmol.2015.5934}, author = {Velez, Gabriel and Roybal, C Nathaniel and Colgan, Diana and Tsang, Stephen H and Bassuk, Alexander G and Mahajan, Vinit B} } @article {637, title = {Reprogramming metabolism by targeting sirtuin 6 attenuates retinal degeneration.}, journal = {J Clin Invest}, volume = {126}, year = {2016}, month = {2016 Dec 01}, pages = {4659-4673}, abstract = {

Retinitis pigmentosa (RP) encompasses a diverse group of Mendelian disorders leading to progressive degeneration of rods and then cones. For reasons that remain unclear, diseased RP photoreceptors begin to deteriorate, eventually leading to cell death and, consequently, loss of vision. Here, we have hypothesized that RP associated with mutations in phosphodiesterase-6 (PDE6) provokes a metabolic aberration in rod cells that promotes the pathological consequences of elevated cGMP and Ca2+, which are induced by the Pde6 mutation. Inhibition of sirtuin 6 (SIRT6), a histone deacetylase repressor of glycolytic flux, reprogrammed rods into perpetual glycolysis, thereby driving the accumulation of biosynthetic intermediates, improving outer segment (OS) length, enhancing photoreceptor survival, and preserving vision. In mouse retinae lacking Sirt6, effectors of glycolytic flux were dramatically increased, leading to upregulation of key intermediates in glycolysis, TCA cycle, and glutaminolysis. Both transgenic and AAV2/8 gene therapy-mediated ablation of Sirt6 in rods provided electrophysiological and anatomic rescue of both rod and cone photoreceptors in a preclinical model of RP. Due to the extensive network of downstream effectors of Sirt6, this study motivates further research into the role that these pathways play in retinal degeneration. Because reprogramming metabolism by enhancing glycolysis is not gene specific, this strategy may be applicable to a wide range of neurodegenerative disorders.

}, keywords = {Animals, Cellular Reprogramming, Cellular Reprogramming Techniques, Citric Acid Cycle, Cyclic GMP, Cyclic Nucleotide Phosphodiesterases, Type 6, Dependovirus, Disease Models, Animal, Eye Proteins, Genetic Therapy, Glycolysis, Mice, Mice, Mutant Strains, Mutation, Retinal Rod Photoreceptor Cells, Retinitis Pigmentosa, Sirtuins, Transduction, Genetic}, issn = {1558-8238}, doi = {10.1172/JCI86905}, author = {Zhang, Lijuan and Du, Jianhai and Justus, Sally and Hsu, Chun-Wei and Bonet-Ponce, Luis and Wu, Wen-Hsuan and Tsai, Yi-Ting and Wu, Wei-Pu and Jia, Yading and Duong, Jimmy K and Mahajan, Vinit B and Lin, Chyuan-Sheng and Wang, Shuang and Hurley, James B and Tsang, Stephen H} } @article {641, title = {Reprogramming towards anabolism impedes degeneration in a preclinical model of retinitis pigmentosa.}, journal = {Hum Mol Genet}, volume = {25}, year = {2016}, month = {2016 10 01}, pages = {4244-4255}, abstract = {

Retinitis pigmentosa (RP) is an incurable neurodegenerative condition featuring photoreceptor death that leads to blindness. Currently, there is no approved therapeutic for photoreceptor degenerative conditions like RP and atrophic age-related macular degeneration (AMD). Although there are promising results in human gene therapy, RP is a genetically diverse disorder, such that gene-specific therapies would be practical in a small fraction of patients with RP. Here, we explore a non-gene-specific strategy that entails reprogramming photoreceptors towards anabolism by upregulating the mechanistic target of rapamycin (mTOR) pathway. We conditionally ablated the tuberous sclerosis complex 1 (Tsc1) gene, an mTOR inhibitor, in the rods of the Pde6bpreclinical RP mouse model and observed, functionally and morphologically, an improvement in the survival of rods and cones at early and late disease stages. These results elucidate the ability of reprogramming the metabolome to slow photoreceptor degeneration. This strategy may also be applicable to a wider range of neurodegenerative diseases, as enhancement of nutrient uptake is not gene-specific and is implicated in multiple pathologies. Enhancing anabolism promoted neuronal survival and function and could potentially benefit a number of photoreceptor and other degenerative conditions.

}, keywords = {Animals, Cell Death, Cellular Reprogramming, Cone-Rod Dystrophies, Disease Models, Animal, Humans, Macular Degeneration, Metabolism, Mice, Photoreceptor Cells, Retinal Cone Photoreceptor Cells, Retinal Rod Photoreceptor Cells, Retinitis Pigmentosa, TOR Serine-Threonine Kinases, Tumor Suppressor Proteins}, issn = {1460-2083}, doi = {10.1093/hmg/ddw256}, author = {Zhang, Lijuan and Justus, Sally and Xu, Yu and Pluchenik, Tamara and Hsu, Chun-Wei and Yang, Jin and Duong, Jimmy K and Lin, Chyuan-Sheng and Jia, Yading and Bassuk, Alexander G and Mahajan, Vinit B and Tsang, Stephen H} } @article {669, title = {Response to Sandford et~al.: PRICKLE2 Variants in Epilepsy: A Call for Precision Medicine.}, journal = {Am J Hum Genet}, volume = {98}, year = {2016}, month = {2016 Mar 03}, pages = {590-591}, keywords = {Animals, Carrier Proteins, DNA-Binding Proteins, Drosophila Proteins, Female, Humans, Male, Mutation, Nerve Tissue Proteins, Seizures, Tumor Suppressor Proteins, Zebrafish Proteins}, issn = {1537-6605}, doi = {10.1016/j.ajhg.2016.02.002}, author = {Mahajan, Vinit B and Bassuk, Alexander G} } @article {653, title = {Secondary glaucoma in CAPN5-associated neovascular inflammatory vitreoretinopathy.}, journal = {Clin Ophthalmol}, volume = {10}, year = {2016}, month = {2016}, pages = {1187-97}, abstract = {

OBJECTIVE: The objective of this study was to review the treatment outcomes of patients with secondary glaucoma in cases of autosomal dominant neovascular inflammatory vitreoretinopathy (ADNIV), a hereditary autoimmune uveitis due to mutations in CAPN5.

PATIENTS AND METHODS: A retrospective, observational case series was assembled from ADNIV patients with secondary glaucoma. The main outcome measures were intraocular pressure (IOP), visual acuity, use of antiglaucoma medications, ocular surgeries, and adverse outcomes. Perimetry and optic disk optical coherence tomography (OCT) were also analyzed.

RESULTS: Nine eyes of five ADNIV patients with secondary glaucoma were reviewed. Each received a fluocinolone acetonide (FA) implant for the management of posterior uveitis. Following implantation, no eyes developed neovascular glaucoma. Five eyes (in patients 1, 2, and 5) required Ahmed glaucoma valve surgery for the management of steroid-responsive glaucoma. Patient 2 also developed angle closure with iris bombe and underwent laser peripheral iridotomy. Patient 4 had both hypotony and elevated IOP that required periodic antiglaucoma medication in the FA-implanted eye. Patient 3 did not develop steroid-response glaucoma in either eye. Optic disk examinations were obscured by fibrosis and better assessed with OCT.

CONCLUSION: ADNIV patients show combined mechanism secondary glaucoma best assessed by OCT of the optic disk. The FA implants have reduced uveitic and neovascular glaucoma. Nevertheless, IOP management remains complex due to steroid-response glaucoma, angle closure glaucoma, and hypotony.

}, issn = {1177-5467}, doi = {10.2147/OPTH.S103324}, author = {Cham, Abdourahman and Bansal, Mayank and Banda, Himanshu K and Kwon, Young and Tlucek, Paul S and Bassuk, Alexander G and Tsang, Stephen H and Sobol, Warren M and Folk, James C and Yeh, Steven and Mahajan, Vinit B} } @article {297, title = {Small-angle X-ray scattering of calpain-5 reveals a highly open conformation among calpains}, journal = {Journal of structural biology}, volume = {196}, year = {2016}, pages = {309{\textendash}318}, author = {Gakhar, Lokesh and Bassuk, Alexander G and Velez, Gabriel and Khan, Saif and Yang, Jing and Tsang, Stephen H and Mahajan, Vinit B} } @article {681, title = {SURGICAL EMBOLECTOMY FOR FOVEA-THREATENING ACUTE RETINAL ARTERY OCCLUSION.}, journal = {Retin Cases Brief Rep}, volume = {10}, year = {2016}, month = {2016 Fall}, pages = {331-3}, abstract = {

PURPOSE: To describe a technique of surgical intraocular embolectomy in patients with acute fovea-threatening branch retinal artery occlusion.

METHODS: Pars plana vitrectomy with embolectomy involving embolus isolation, dissection, and removal in patients with an acute fovea-threatening arterial occlusion without a patent cilioretinal artery.

RESULTS: The surgical technique involves a core vitrectomy. The blocked artery is incised using a microvitreoretinal blade, and microsurgical forceps are used to retrieve the embolus. No significant complications were noted. The study technique offers an excellent safety profile and minimizes the risk of vitreous hemorrhage by carefully dissecting the vascular adventitial sheath and isolating the embolus.

CONCLUSION: Surgical embolectomy is a viable technique for patients with acute fovea-threatening arterial occlusions without patent cilioretinal artery. Careful dissection and retrieval of the embolus minimizes the risk of vitreous hemorrhage, which is an important improvement in previous techniques for management of acute retinal arterial occlusions.

}, keywords = {Acute Disease, Embolectomy, Humans, Retinal Artery Occlusion, Treatment Outcome, Vitrectomy}, issn = {1937-1578}, doi = {10.1097/ICB.0000000000000257}, author = {Almeida, David R P and Mammo, Zaid and Chin, Eric K and Mahajan, Vinit B} } @article {wert2015capn5, title = {CAPN5 mutation in hereditary uveitis: the R243L mutation increases calpain catalytic activity and triggers intraocular inflammation in a mouse model}, journal = {Human molecular genetics}, volume = {24}, number = {16}, year = {2015}, pages = {4584{\textendash}4598}, publisher = {Oxford University Press}, author = {Wert, Katherine J and Bassuk, Alexander G and Wu, Wen-Hsuan and Gakhar, Lokesh and Coglan, Diana and Mahajan, Maryann and Wu, Shu and Yang, Jing and Lin, Chyuan-Sheng and Tsang, Stephen H and others} } @article {687, title = {Intravitreal Anti-VEGF Injections in Pregnancy: Case Series and Review of Literature.}, journal = {J Ocul Pharmacol Ther}, volume = {31}, year = {2015}, month = {2015 Dec}, pages = {605-10}, abstract = {

The use of intravitreal antivascular endothelial growth factor (anti-VEGF) injection is gaining wide acceptance as an off-label therapy for diseases that may affect pregnant women. However, these drugs may cause systemic side effects in the mother and fetal harm. This could lead specialists to not administer the drug or women to abort the fetus or to refuse treatment during pregnancy. We report the course of pregnancy in 3 women treated with intravitreal bevacizumab and provide a review of the literature on the use of intravitreal anti-VEGF in pregnancy. Our patients did not have any drug-related adverse event and delivered healthy full-term infants, although one of the women had risk factors for miscarriage. Infants reached all developmental milestones appropriately during infancy. A literature search on the use of intravitreal anti-VEGF injection in pregnancy was undertaken. Data for this review were identified by searches of PubMed and references from relevant articles using the search terms "pegaptanib," "bevacizumab," "ranibizumab," "aflibercept," "anti-VEGF," "intravitreal injection," "pregnant," "pregnancy," "abortion," "miscarriage," "preeclampsia," "embryo-fetal toxicity," "fetal malformations," "teratogenesis," "adverse events," and "maternofetal complications" in multiple combinations. We believe that intravitreal anti-VEGF can be given during pregnancy only when potential benefit to the woman justifies the potential risks to the fetus. When making a decision about whether to give drugs during pregnancy, it is important to consider the timing of exposure and its relationship to windows of developmental sensitivity. We believe that this review will be useful to specialists to inform and possibly treat their pregnant patients.

}, keywords = {Adult, Angiogenesis Inhibitors, Bevacizumab, Female, Humans, Infant, Newborn, Intravitreal Injections, Pregnancy, Pregnancy Complications, Pregnancy Outcome, Risk Factors, Vascular Endothelial Growth Factor A}, issn = {1557-7732}, doi = {10.1089/jop.2015.0056}, author = {Polizzi, Silvio and Mahajan, Vinit B} } @article {689, title = {Long-term outcomes in patients undergoing vitrectomy for retinal detachment due to viral retinitis.}, journal = {Clin Ophthalmol}, volume = {9}, year = {2015}, month = {2015}, pages = {1307-14}, abstract = {

PURPOSE: To determine the outcomes in patients with rhegmatogenous retinal detachment (RRD) secondary to viral retinitis.

PATIENTS AND METHODS: This was a retrospective, consecutive, noncomparative, interventional case series of 12 eyes in ten patients with RRD secondary to viral retinitis. Results of vitreous or aqueous biopsy, effect of antiviral therapeutics, time to retinal detachment, course of visual acuity, and anatomic and surgical outcomes were investigated.

RESULTS: There were 1,259 cases of RRD during the study period, with 12 cases of RRD secondary to viral retinitis (prevalence of 0.95\%). Follow-up was available for a mean period of 4.4 years. Varicella zoster virus was detected in six eyes, herpes simplex virus in two eyes, and cytomegalovirus in two eyes. Eight patients were treated with oral valacyclovir and two patients with intravenous acyclovir. Lack of optic nerve involvement correlated with improved final visual acuity of 20/100 or greater. Pars plana vitrectomy (n=12), silicone-oil tamponade (n=11), and scleral buckling (n=10) provided successful anatomic retinal reattachment in all cases, with no recurrent retinal detachment and no cases of hypotony during the follow-up period.

CONCLUSION: Varicella zoster virus was the most frequent cause of viral retinitis, and lack of optic nerve involvement was predictive of a favorable visual acuity prognosis. Vitrectomy with silicone-oil tamponade and scleral buckle placement provided stable anatomical outcomes.

}, issn = {1177-5467}, doi = {10.2147/OPTH.S87644}, author = {Almeida, David RP and Chin, Eric K and Tarantola, Ryan M and Tegins, Elizabeth O and Lopez, Christopher A and Boldt, Herbert Culver and Gehrs, Karen M and Sohn, Elliott H and Russell, Stephen R and Folk, James C and Mahajan, Vinit B} } @article {701, title = {Macular Hole Closure With Internal Limiting Membrane Abrasion Technique.}, journal = {JAMA Ophthalmol}, volume = {133}, year = {2015}, month = {2015 Jun}, pages = {635-41}, abstract = {

IMPORTANCE: Internal limiting membrane (ILM) abrasion is an alternative surgical technique for successful full-thickness macular hole (MH) repair.

OBJECTIVE: To study the effects of ILM abrasion as an alternative method of MH repair.

DESIGN, SETTING, AND PARTICIPANTS: Retrospective consecutive case series from January 2006 to December 2008. Demographic data and preoperative, intraoperative, and postoperative examination records of all patients were reviewed for patients who underwent ILM abrasion with a diamond-dusted membrane scraper during vitrectomy for MH repair. A total of 100 eyes underwent ILM abrasion as an alternative to traditional ILM peeling.

MAIN OUTCOMES AND MEASURES: Rate of MH closure and visual acuity (VA) outcomes at 3 months after surgery.

RESULTS: Macular hole closure was achieved with a single surgical procedure in 94 of 100 eyes (94.0\%; 95\% CI, 87.4\%-97.8\%). Among all patients, the median preoperative VA was 20/100 (range, 20/30 to hand motions; 25th quartile, 20/60; and 75th quartile, 20/160), and the median postoperative VA at 3 months after surgery was 20/60 (range, 20/20 to hand motions; 25th quartile, 20/40; and 75th quartile, 20/100). Among all patients with stage 2 MHs, 30 of 38 patients (78.9\%) had at least 2 lines of VA gain: 15 of 23 (65.2\%) were phakic, and 15 of 15 (100\%) were pseudophakic. Four of 38 patients (10.5\%) with stage 2 MHs had at least 2 lines of VA loss, and all were phakic. Among all patients with stage 3 or 4 MHs, 42 of 62 (67.7\%) had at least 2 lines of VA gain, of which 30 of 38 (78.9\%) were phakic and 22 of 24 (91.7\%) were pseudophakic. Six of 62 patients (9.7\%) with stage 3 or 4 MHs had at least 2 lines of VA loss: 4 were phakic, and 2 were pseudophakic. In total, 35.0\% (95\% CI, 25.7\%-44.3\%) of patients achieved 20/40 vision or better, and 52.0\% (95\% CI, 42.2\%-61.8\%) of patients achieved 20/50 vision or better.

CONCLUSIONS AND RELEVANCE: Abrasion of the ILM with a diamond-dusted membrane scraper at the time of vitrectomy achieves high rates of MH closure. This technique avoids complete removal of the retinal ILM basement membrane and subjacent tissues and appears to provide MH closure rates similar to those of traditional ILM peeling.

}, keywords = {Adult, Aged, Aged, 80 and over, Basement Membrane, Endotamponade, Female, Fluorocarbons, Humans, Male, Middle Aged, Ophthalmologic Surgical Procedures, Prone Position, Retinal Perforations, Retrospective Studies, Sulfur Hexafluoride, Tomography, Optical Coherence, Visual Acuity, Vitrectomy}, issn = {2168-6173}, doi = {10.1001/jamaophthalmol.2015.204}, author = {Mahajan, Vinit B and Chin, Eric K and Tarantola, Ryan M and Almeida, David R P and Somani, Riz and Boldt, H Culver and Folk, James C and Gehrs, Karen M and Russell, Stephen R} } @article {685, title = {Management of Choroidal Granulomas Involving the Macula in Corticosteroid-Intolerant Patients.}, journal = {JAMA Ophthalmol}, volume = {133}, year = {2015}, month = {2015 Nov}, pages = {1351-2}, keywords = {Adult, Choroid Diseases, Combined Modality Therapy, Dexamethasone, Drug Therapy, Combination, Drug Tolerance, Folic Acid Antagonists, Glucocorticoids, Granuloma, Humans, Interferon-gamma Release Tests, Intravitreal Injections, Macula Lutea, Male, Methotrexate, Tuberculoma, Tuberculosis, Ocular, Vitrectomy}, issn = {2168-6173}, doi = {10.1001/jamaophthalmol.2015.1951}, author = {Chin, Eric K and Almeida, David R P and Mahajan, Vinit B} } @article {695, title = {The metabolic syndrome and severity of diabetic retinopathy.}, journal = {Clin Ophthalmol}, volume = {9}, year = {2015}, month = {2015}, pages = {757-64}, abstract = {

BACKGROUND: While metabolic syndrome has been strongly implicated as a risk factor for macrovascular diseases, such as stroke and cardiovascular disease, its relationship with microvascular diseases, including diabetic retinopathy, has been less defined. The purpose of this pilot study was to investigate the association between metabolic syndrome and the presence and severity of diabetic retinopathy.

METHODS: A retrospective case-control chart review at the University of Iowa ophthalmology and primary care clinics included 100 patients with proliferative diabetic retinopathy (PDR), 100 patients with nonproliferative diabetic retinopathy (NPDR), 100 diabetic patients without diabetic retinopathy, and 100 nondiabetic patients who were randomly selected. Using the International Diabetes Foundation definition, the prevalence of metabolic syndrome and the number of components of metabolic syndrome were compared among these groups.

RESULTS: The prevalence of metabolic syndrome in patients with diabetes was 69.3\%, which was significantly higher than that in patients without diabetes (27\%; P<0.0001) (odds ratio [OR] =6.28; 95\% confidence interval [CI]: 3.76-10.49; P=0.0004). However, there was no significant difference in the prevalence of metabolic syndrome between diabetics with and without diabetic retinopathy, with rates of 67.5\% and 73\%, respectively (P=0.36) (OR =0.77; 95\% CI: 0.45-1.32; P=0.34). In addition, there was no significant difference between the PDR and NPDR groups, with rates of 63\% and 72\%, respectively (P=0.23) (OR =0.70; 95\% CI: 0.38-1.30; P=0.26).

CONCLUSION: The metabolic syndrome was highly prevalent in patients with diabetes, but it was not associated with the presence or severity of retinopathy.

}, issn = {1177-5467}, doi = {10.2147/OPTH.S80355}, author = {Chen, John J and Wendel, Lucas J and Birkholz, Emily S and Vallone, John G and Coleman, Anne L and Yu, Fei and Mahajan, Vinit B} } @article {693, title = {Proteomic insight into the molecular function of the vitreous.}, journal = {PLoS One}, volume = {10}, year = {2015}, month = {2015}, pages = {e0127567}, abstract = {

The human vitreous contains primarily water, but also contains proteins which have yet to be fully characterized. To gain insight into the four vitreous substructures and their potential functions, we isolated and analyzed the vitreous protein profiles of three non-diseased human eyes. The four analyzed substructures were the anterior hyaloid, the vitreous cortex, the vitreous core, and the vitreous base. Proteins were separated by multidimensional liquid chromatography and identified by tandem mass spectrometry. Bioinformatics tools then extracted the expression profiles, signaling pathways, and interactomes unique to each tissue. From each substructure, a mean of 2,062 unique proteins were identified, with many being differentially expressed in a specific substructure: 278 proteins were unique to the anterior hyaloid, 322 to the vitreous cortex, 128 to the vitreous base, and 136 to the vitreous core. When the identified proteins were organized according to relevant functional pathways and networks, key patterns appeared. The blood coagulation pathway and extracellular matrix turnover networks were highly represented. Oxidative stress regulation and energy metabolism proteins were distributed throughout the vitreous. Immune functions were represented by high levels of immunoglobulin, the complement pathway, damage-associated molecular patterns (DAMPs), and evolutionarily conserved antimicrobial proteins. The majority of vitreous proteins detected were intracellular proteins, some of which originate from the retina, including rhodopsin (RHO), phosphodiesterase 6 (PDE6), and glial fibrillary acidic protein (GFAP). This comprehensive analysis uncovers a picture of the vitreous as a biologically active tissue, where proteins localize to distinct substructures to protect the intraocular tissues from infection, oxidative stress, and energy disequilibrium. It also reveals the retina as a potential source of inflammatory mediators. The vitreous proteome catalogues the dynamic interactions between the vitreous and surrounding tissues. It therefore could be an indirect and effective method for surveying vitreoretinal disease for specific biomarkers.

}, keywords = {Aged, Aged, 80 and over, Eye Proteins, Female, Gene Expression Regulation, Humans, Male, Middle Aged, Proteome, Proteomics, Vitreous Body}, issn = {1932-6203}, doi = {10.1371/journal.pone.0127567}, author = {Skeie, Jessica M and Roybal, C Nathaniel and Mahajan, Vinit B} } @article {713, title = {Quantitative autofluorescence as a clinical tool for expedited differential diagnosis of retinal degeneration.}, journal = {JAMA Ophthalmol}, volume = {133}, year = {2015}, month = {2015 Feb}, pages = {219-20}, keywords = {Adult, ATP-Binding Cassette Transporters, Diagnosis, Differential, DNA, DNA Mutational Analysis, Fluorescein Angiography, Fundus Oculi, Humans, Male, Mutation, Optical Imaging, Retina, Retinal Degeneration, Retinitis Pigmentosa}, issn = {2168-6173}, doi = {10.1001/jamaophthalmol.2014.4507}, author = {Marsiglia, Marcela and Lee, Winston and Mahajan, Vinit B and Zernant, Jana and Delori, Fran{\c c}ois C and Tsang, Stephen H and Sparrow, Janet R} } @article {705, title = {Scleral buckle hemorrhagic cyst masquerading as an orbital tumor.}, journal = {Clin Ophthalmol}, volume = {9}, year = {2015}, month = {2015}, pages = {343-5}, abstract = {

We present a case of a 41-year-old man who was referred for evaluation of a choroidal tumor with a remote history of scleral buckle placement for traumatic retinal detachment. Ocular imaging, echography, and magnetic resonance imaging could not rule out a neoplastic process so the patient was taken for surgical exploration where a hemorrhagic cyst was discovered. This is the first case in the literature of a silicone scleral buckle-associated hemorrhagic cyst presenting as orbital mass.

}, issn = {1177-5467}, doi = {10.2147/OPTH.S76351}, author = {Almeida, David RP and Chin, Eric K and Boldt, H Culver and Mahajan, Vinit B} } @article {paemka2015seizures, title = {Seizures are regulated by ubiquitin-specific peptidase 9 X-linked (USP9X), a de-ubiquitinase}, journal = {PLoS genetics}, volume = {11}, number = {3}, year = {2015}, pages = {e1005022}, publisher = {Public Library of Science}, author = {Paemka, Lily and Mahajan, Vinit B and Ehaideb, Salleh N and Skeie, Jessica M and Tan, Men Chee and Wu, Shu and Cox, Allison J and Sowers, Levi P and Gecz, Jozef and Jolly, Lachlan and others} } @article {711, title = {Spontaneous dislocation of a fluocinolone acetonide implant (Retisert) into the anterior chamber and its successful extraction in sympathetic ophthalmia.}, journal = {Retin Cases Brief Rep}, volume = {9}, year = {2015}, month = {2015 Spring}, pages = {142-4}, abstract = {

PURPOSE: To report a case of spontaneous fluocinolone acetonide (Retisert) implant dislocation and migration into the anterior chamber.

METHODS: Retrospective case report.

PATIENTS: One patient with sympathetic ophthalmia uveitis was well controlled by fluocinolone acetonide implants.

RESULTS: The fluocinolone acetonide implant spontaneously migrated into the anterior chamber causing corneal edema and anterior chamber reaction. The implant was subsequently successfully removed through a temporal corneal wound.

CONCLUSION: Clinicians should be aware of the spontaneous dislocation and migration of an intact fluocinolone implant as a potential surgical complication, particularly in pseudophakic eyes with iridectomy.

}, keywords = {Anterior Chamber, Device Removal, Drug Implants, Fluocinolone Acetonide, Glucocorticoids, Humans, Male, Middle Aged, Ophthalmia, Sympathetic, Visual Acuity}, issn = {1937-1578}, doi = {10.1097/ICB.0000000000000119}, author = {Almeida, David R P and Chin, Eric K and Mears, Katrina and Russell, Stephen R and Mahajan, Vinit B} } @article {699, title = {Structural modeling of a novel CAPN5 mutation that causes uveitis and neovascular retinal detachment.}, journal = {PLoS One}, volume = {10}, year = {2015}, month = {2015}, pages = {e0122352}, abstract = {

CAPN5 mutations have been linked to autosomal dominant neovascular inflammatory vitreoretinopathy (ADNIV), a blinding autoimmune eye disease. Here, we link a new CAPN5 mutation to ADNIV and model the three-dimensional structure of the resulting mutant protein. In our study, a kindred with inflammatory vitreoretinopathy was evaluated by clinical eye examinations, DNA sequencing, and protein structural modeling to investigate the disease-causing mutation. Two daughters of an affected mother demonstrated symptoms of stage III ADNIV, with posterior uveitis, cystoid macular edema, intraocular fibrosis, retinal neovascularization, retinal degeneration, and cataract. The women also harbored a novel guanine to thymine (c.750G\>T, p.Lys250Asn) missense mutation in exon 6 of CAPN5, a gene that encodes a calcium-activated cysteine protease, calpain-5. Modeling based on the structures of all known calpains revealed the mutation falls within a calcium-sensitive flexible gating loop that controls access to the catalytic groove. Three-dimensional modeling placed the new mutation in a region adjacent to two previously identified disease-causing mutations, all three of which likely disrupt hydrogen bonding within the gating loop, yielding a CAPN5 with altered enzymatic activity. This is the third case of a CAPN5 mutation leading to inherited uveitis and neovascular vitreoretinopathy, suggesting patients with ADNIV features should be tested for CAPN5 mutations. Structural modeling of novel variants can be used to support mechanistic consequences of the disease-causing variants.

}, keywords = {Base Sequence, Calpain, Computational Biology, DNA Primers, Female, Fluorescein Angiography, Humans, Models, Molecular, Molecular Sequence Data, Mutation, Missense, Pedigree, Phenotype, Protein Conformation, Retinal Detachment, Sequence Analysis, DNA, Tomography, Optical Coherence, Uveitis, Vitreoretinopathy, Proliferative}, issn = {1932-6203}, doi = {10.1371/journal.pone.0122352}, author = {Bassuk, Alexander G and Yeh, Steven and Wu, Shu and Martin, Daniel F and Tsang, Stephen H and Gakhar, Lokesh and Mahajan, Vinit B} } @article {527, title = {CAPN5 gene silencing by short hairpin RNA interference}, journal = {BMC research notes}, volume = {7}, year = {2014}, pages = {642}, author = {Nelson, Nnamdi G and Skeie, Jessica M and Muradov, Hakim and Rowell, Hannah A and Seo, Seongjin and Mahajan, Vinit B} } @article {725, title = {Decreased macular thickness in nonproliferative macular telangiectasia type 2 with oral carbonic anhydrase inhibitors.}, journal = {Retina}, volume = {34}, year = {2014}, month = {2014 Jul}, pages = {1400-6}, abstract = {

PURPOSE: To evaluate whether carbonic anhydrase inhibitors reduce the macular thickness and/or cystic spaces in patients with macular telangiectasia (MacTel) Type 2.

METHODS: Retrospective review of patients with nonproliferative cystoid changes associated with MacTel seen at the University of Iowa between 2009 and 2012. Carbonic anhydrase inhibitors were used in 8 patients with MacTel Type 2. Five patients with MacTel Type 2 were observed during this period. Initial and final visual acuities were documented. The presence of cystic spaces and the retinal thickness were measured with spectral-domain optical coherence tomography.

RESULTS: Patients treated with oral carbonic anhydrase inhibitors showed significant reduction in both the cystoid cavities and central macular thickness when compared with the patients who were observed (-12.2 μm; P = 0.020). The reduction in retinal thickness was more pronounced in patients receiving acetazolamide (-20.13 μm; P = 0.007) compared with methazolamide (-6.25 μm; P = 0.177). There was no significant change in visual acuity in patients receiving carbonic anhydrase inhibitors. Five patients with MacTel Type 2 did not receive treatment and demonstrated no change in visual acuity, cystoid cavities, or central macular thickness.

CONCLUSION: Oral carbonic anhydrase inhibitors, particularly acetazolamide, may decrease macular cystic cavities and reduce central macular thickness but does not appear to improve visual acuity. These findings have yet to be confirmed with a prospective treatment trial.

}, keywords = {Acetazolamide, Administration, Oral, Adult, Aged, Carbonic Anhydrase Inhibitors, Female, Fluorescein Angiography, Humans, Male, Methazolamide, Middle Aged, Organ Size, Retina, Retinal Telangiectasis, Retrospective Studies, Tomography, Optical Coherence, Visual Acuity}, issn = {1539-2864}, doi = {10.1097/IAE.0000000000000093}, author = {Chen, John J and Sohn, Elliott H and Folk, James C and Mahajan, Vinit B and Kay, Christine N and Boldt, H Culver and Russell, Stephen R} } @article {83, title = {Defective Motile Cilia in Prickle2-Deficient Mice.}, journal = {J Neurogenet}, year = {2014}, month = {2014 Apr 7}, abstract = {

Motile cilia play diverse roles across phyla and cell types, and abnormalities in motile cilia lead to numerous disease states, including hydrocephalus. Although motile ciliary abnormalities in Prickle2 mutants have not yet been described, the planar cell polarity genes, including Prickle2, are implicated in the development and function of motile cilia. This report evaluates Prickle2-deficient mice for dysfunction in processes known to depend on functioning motile cilia. Prickle2-deficient mice do not develop hydrocephalus, but do display abnormal morphology and motility in the motile cilia of the ependyma. The morphology of tracheal motile cilia is also abnormal. Taken together, these results demonstrate that Prickle2 is required for normal ependymal motile cilia development and function.

}, author = {Sowers, Levi P and Yin, Terry and Mahajan, Vinit B and Bassuk, Alexander G} } @article {85, title = {Functional validation of a human CAPN5 exome variant by lentiviral transduction into mouse retina.}, journal = {Hum Mol Genet}, year = {2014}, month = {2014 Jan 12}, abstract = {

Exome sequencing indicated that the gene encoding the calpain-5 protease, CAPN5, is the likely cause of retinal degeneration and autoimmune uveitis in human patients with autosomal dominant neovascular inflammatory vitreoretinopathy (ADNIV, OMIM $\#$193235). To explore the mechanism of ADNIV, a human CAPN5 disease allele was expressed in mouse retinas with a lentiviral vector created to express either the wild-type human (h) CAPN5 or the ADNIV mutant hCAPN5-R243L allele under a rhodopsin promoter with tandem green fluorescent protein (GFP) expression. Vectors were injected into the subretinal space of perinatal mice. Mouse phenotypes were analyzed using electroretinography, histology and inflammatory gene expression profiling. Mouse calpain-5 showed high homology to its human ortholog with \>98\% sequence identity that includes the ADNIV mutant residue. Calpain-5 protein was expressed in the inner and outer segments of the photoreceptors and in the outer plexiform layer. Expression of the hCAPN5-R243L allele caused loss of the electroretinogram b-wave, photoreceptor degeneration and induction of immune cell infiltration and inflammatory genes in the retina, recapitulating major features of the ADNIV phenotype. Intraocular neovascularization and fibrosis were not observed during the study period. Our study shows that expression of the hCAPN5-R243L disease allele elicits an ADNIV-like disease in mice. It further suggests that ADNIV is due to CAPN5 gain-of-function rather than haploinsufficiency, and retinal expression may be sufficient to generate an autoimmune response. Genetic models of ADNIV in the mouse can be used to explore protease mechanisms in retinal degeneration and inflammation as well as preclinical therapeutic testing.

}, author = {Wert, Katherine J and Skeie, Jessica M and Bassuk, Alexander G and Olivier, Alicia K and Tsang, Stephen H and Mahajan, Vinit B} } @article {709, title = {Incomplete vitreomacular traction release using intravitreal ocriplasmin.}, journal = {Case Rep Ophthalmol}, volume = {5}, year = {2014}, month = {2014 Sep-Dec}, pages = {455-62}, abstract = {

PURPOSE: To report the clinical course of our first 7 consecutive patients treated with intravitreal ocriplasmin (Jetrea(\®)).

METHODS: Retrospective case series of the first 7 patients treated with ocriplasmin between January and December 2013 at an academic tertiary care center.

RESULTS: The average age was 78.4 years (range: 63-92). Five patients were pseudophakic and 2 patients were phakic in the injected eye. The median baseline visual acuity (VA) was 20/60 (range: 20/25 to 20/200). The median 1-month postinjection VA was 20/70, with a mean loss of 2 lines of VA among all patients. None of the patients had complete resolution of their vitreomacular traction or macular hole at 1 month of follow-up. Three patients had subsequent pars plana vitrectomy and membrane peeling surgery. The mean follow-up period for those who did not undergo vitrectomy was 9 months (range: 1-13). One patient with known ocular hypertension had an increase in intraocular pressure requiring topical pressure-lowering eyedrops. There were no cases of postinjection uveitis, endophthalmitis, retinal tears, or retinal detachment.

CONCLUSIONS: While ocriplasmin may be a viable pharmacological agent for vitreolysis, we present a series of patients that all had incomplete resolution of vitreomacular traction with and without full-thickness macular hole. There was an associated reduction in VA after ocriplasmin treatment at 1 month of follow-up. Careful analysis of the vitreoretinal interface and comorbid eye conditions is required to optimize outcome success with ocriplasmin.

}, issn = {1663-2699}, doi = {10.1159/000370024}, author = {Chin, Eric K and Almeida, David R P and Sohn, Elliott H and Boldt, H Culver and Mahajan, Vinit B and Gehrs, Karen M and Russell, Stephen R and Folk, James C} } @article {87, title = {A novel RPGR mutation masquerading as Stargardt disease.}, journal = {Br J Ophthalmol}, year = {2014}, month = {2014 Jan 31}, author = {Bassuk, Alexander G and Sujirakul, Tharikarn and Tsang, Stephen H and Mahajan, Vinit B} } @article {719, title = {Proteomic landscape of the human choroid-retinal pigment epithelial complex.}, journal = {JAMA Ophthalmol}, volume = {132}, year = {2014}, month = {2014 Nov}, pages = {1271-81}, abstract = {

IMPORTANCE: Differences in geographical protein expression in the human choroid-retinal pigment epithelial (RPE) complex may explain molecular predisposition of regions to ophthalmic diseases such as age-related macular degeneration.

OBJECTIVE: To characterize the proteome of the human choroid-RPE complex and to identify differentially expressed proteins in specific anatomic regions.

DESIGN, SETTING, AND PARTICIPANTS: Experimental study of choroid-RPE tissue from 3 nondiseased eyes. The choroid-RPE complex underwent biopsy from beneath the foveal, macular, and peripheral retina. Protein fractions were isolated and subjected to multidimensional liquid chromatography and tandem mass spectrometry. A bioinformatic pipeline matched peptide spectra to the human proteome, assigned gene ontology classification, and identified protein signaling pathways unique to each of the choroid-RPE regions.

MAIN OUTCOMES AND MEASURES: Mean number of mass spectra, statistically significant differentially expressed proteins, gene ontology classification, and pathway representation.

RESULTS: We identified a mean of 4403 unique proteins in each of the foveal, macular, and peripheral choroid-RPE tissues. Six hundred seventy-one differentially expressed proteins included previously known risk factors for retinal diseases related to oxidative stress, inflammation, and the complement cascade. Gene ontology analysis showed that unique categories in the foveal and macular regions included immune process proteins as well as protein complexes and plasma membrane proteins. The peripheral region contained unique antioxidant activity proteins. Many proteins had the highest expression in the foveal or macular regions, including inflammation-related proteins HLA-A, HLA-B, and HLA-C antigens; intercellular adhesion molecule 1 (ICAM-1); S100; transcription factor ERG; antioxidant superoxide dismutase 1 (SOD1); chloride intracellular channel 6 ion (CLIC6); activators of the complement cascade C1q, C6, and C8; and complement factor H. Proteins with higher expression in the periphery included bestrophin 1 (BEST1), transcription factor RNA binding motif protein 39 (RBM39), inflammatory mediator macrophage migration inhibitory factor, antioxidant SOD3, ion channel voltage-dependent anion-selective channel protein 3 (VDAC3), and complement inhibitor CD55. The complement activation was among the highest represented pathways (P < 7.5e-13).

CONCLUSIONS AND RELEVANCE: This proteomic data set identifies novel molecular signatures in anatomically sensitive regions of the choroid-RPE complex. The findings give mechanistic insight into choroid-RPE function, reveal important choroid-RPE processes, and prioritize new pathways for therapeutic targeting.

}, keywords = {Aged, 80 and over, Choroid, Chromatography, Liquid, Computational Biology, Eye Proteins, Female, Gene Expression Regulation, Gene Ontology, Humans, Male, Proteome, Proteomics, Retinal Pigment Epithelium, Tandem Mass Spectrometry}, issn = {2168-6173}, doi = {10.1001/jamaophthalmol.2014.2065}, author = {Skeie, Jessica M and Mahajan, Vinit B} } @article {707, title = {Silencing of tuberin enhances photoreceptor survival and function in a preclinical model of retinitis pigmentosa (an american ophthalmological society thesis).}, journal = {Trans Am Ophthalmol Soc}, volume = {112}, year = {2014}, month = {2014 Jul}, pages = {103-15}, abstract = {

PURPOSE: To assess the functional consequences of silencing of tuberin, an inhibitor of the mTOR signaling pathway, in a preclinical model of retinitis pigmentosa (RP) in order to test the hypothesis that insufficient induction of the protein kinase B (PKB)-regulated tuberin/mTOR self-survival pathway initiates apoptosis.

METHODS: In an unbiased genome-scale approach, kinase peptide substrate arrays were used to analyze self-survival pathways at the onset of photoreceptor degeneration. The mutant Pde6b(H620Q)/Pde6b(H620Q) at P14 and P18 photoreceptor outer segment (OS) lysates were labeled with P-ATP and hybridized to an array of 1,164 different synthetic peptide substrates. At this stage, OS of Pde6b(H620Q)/Pde6b(H620Q) rods are morphologically normal. In vitro kinase assays and immunohistochemistry were used to validate phosphorylation. Short hairpin RNA (shRNA) gene silencing was used to validate tuberin{\textquoteright}s role in regulating survival.

RESULTS: At the onset of degeneration, 162 peptides were differentially phosphorylated. Protein kinases A, G, C (AGC kinases), and B exhibited increased activity in both peptide array and in vitro kinase assays. Immunohistochemical data confirmed altered phosphorylation patterns for phosphoinositide-dependent kinase-1 (PDK1), ribosomal protein S6 (RPS6), and tuberin. Tuberin gene silencing rescued photoreceptors from degeneration.

CONCLUSIONS: Phosphorylation of tuberin and RPS6 is due to the upregulated activity of PKB. PKB/tuberin cell growth/survival signaling is activated before the onset of degeneration. Substrates of the AGC kinases in the PKB/tuberin pathway are phosphorylated to promote cell survival. Knockdown of tuberin, the inhibitor of the mTOR pathway, increased photoreceptor survival and function in a preclinical model of RP.

}, keywords = {Animals, Apoptosis, Disease Models, Animal, Gene Silencing, Mice, Mice, Mutant Strains, Phosphorylation, Phosphotransferases, Proto-Oncogene Proteins c-akt, Retinitis Pigmentosa, Ribosomal Protein S6, Signal Transduction, Tumor Suppressor Proteins}, issn = {1545-6110}, author = {Tsang, Stephen H and Chan, Lawrence and Tsai, Yi-Ting and Wu, Wen-Hsuan and Hsu, Chun-Wei and Yang, Jin and Tosi, Joaquin and Wert, Katherine J and Davis, Richard J and Mahajan, Vinit B} } @article {tsang2014silencing, title = {Silencing of tuberin enhances photoreceptor survival and function in a preclinical model of retinitis pigmentosa (an american ophthalmological society thesis)}, journal = {Transactions of the American Ophthalmological Society}, volume = {112}, year = {2014}, pages = {103}, publisher = {American Ophthalmological Society}, author = {Tsang, Stephen H and Chan, Lawrence and Tsai, Yi-Ting and Wu, Wen-Hsuan and Hsu, Chun-Wei and Yang, Jin and Tosi, Joaquin and Wert, Katherine J and Davis, Richard J and Mahajan, Vinit B} } @article {715, title = {Spinster homolog 2 (spns2) deficiency causes early onset progressive hearing loss.}, journal = {PLoS Genet}, volume = {10}, year = {2014}, month = {2014 Oct}, pages = {e1004688}, abstract = {

Spinster homolog 2 (Spns2) acts as a Sphingosine-1-phosphate (S1P) transporter in zebrafish and mice, regulating heart development and lymphocyte trafficking respectively. S1P is a biologically active lysophospholipid with multiple roles in signalling. The mechanism of action of Spns2 is still elusive in mammals. Here, we report that Spns2-deficient mice rapidly lost auditory sensitivity and endocochlear potential (EP) from 2 to 3 weeks old. We found progressive degeneration of sensory hair cells in the organ of Corti, but the earliest defect was a decline in the EP, suggesting that dysfunction of the lateral wall was the primary lesion. In the lateral wall of adult mutants, we observed structural changes of marginal cell boundaries and of strial capillaries, and reduced expression of several key proteins involved in the generation of the EP (Kcnj10, Kcnq1, Gjb2 and Gjb6), but these changes were likely to be secondary. Permeability of the boundaries of the stria vascularis and of the strial capillaries appeared normal. We also found focal retinal degeneration and anomalies of retinal capillaries together with anterior eye defects in Spns2 mutant mice. Targeted inactivation of Spns2 in red blood cells, platelets, or lymphatic or vascular endothelial cells did not affect hearing, but targeted ablation of Spns2 in the cochlea using a Sox10-Cre allele produced a similar auditory phenotype to the original mutation, suggesting that local Spns2 expression is critical for hearing in mammals. These findings indicate that Spns2 is required for normal maintenance of the EP and hence for normal auditory function, and support a role for S1P signalling in hearing.

}, keywords = {Age of Onset, Animals, Anion Transport Proteins, Anterior Eye Segment, Cochlea, Connexins, Ear, Inner, Hair Cells, Auditory, Hearing Loss, Lysophospholipids, Mice, Organogenesis, Sphingosine, Stria Vascularis, Zebrafish}, issn = {1553-7404}, doi = {10.1371/journal.pgen.1004688}, author = {Chen, Jing and Ingham, Neil and Kelly, John and Jadeja, Shalini and Goulding, David and Pass, Johanna and Mahajan, Vinit B and Tsang, Stephen H and Nijnik, Anastasia and Jackson, Ian J and White, Jacqueline K and Forge, Andrew and Jagger, Daniel and Steel, Karen P} } @article {745, title = {Aflibercept therapy for exudative age-related macular degeneration resistant to bevacizumab and ranibizumab.}, journal = {Am J Ophthalmol}, volume = {156}, year = {2013}, month = {2013 Jul}, pages = {15-22.e1}, abstract = {

PURPOSE: To evaluate the outcome of intravitreal injection of aflibercept in cases with exudative age-related macular degeneration, (AMD) resistant to injections of bevacizumab or ranibizumab.

DESIGN: Retrospective observational case series.

METHODS: A retrospective chart review at a single institution was conducted to identify patients with exudative AMD and choroidal neovascularization (CNV) in 1 or both eyes resistant to treatment with ranibizumab or bevacizumab who were switched to treatment with at least 3~monthly injections of aflibercept. In total, 36 eyes from 31 patients were included. The demographic data, visual acuities, central macular thickness on optical coherence tomography (OCT), complications, and number of injections were reviewed.

RESULTS: The mean patient age was 79 years (range 60-88). There were 13 male and 18 female patients. The number of prior injections with either bevacizumab or ranibizumab ranged from 6-74. After 3~monthly injections of aflibercept, there was a reduction of either subretinal or intraretinal fluid in 18 of 36 (50.0\%) of the treated eyes; the amount of fluid remained stable in 15 eyes (41.7\%) and worsened in 3 eyes (8.3\%). A significant average decrease was observed for the central macular thickness after 3 injections of 65~μm (P~= 2.9~{\texttimes} 10(-6)), with no significant change in visual acuity.

CONCLUSIONS: Aflibercept therapy appears to be beneficial in a subset of patients with neovascular age-related macular degeneration who exhibit recurrent or resistant intraretinal or subretinal fluid following multiple injections with either bevacizumab or ranibizumab.

}, keywords = {Aged, Aged, 80 and over, Angiogenesis Inhibitors, Antibodies, Monoclonal, Humanized, Bevacizumab, Drug Resistance, Drug Substitution, Exudates and Transudates, Female, Humans, Intravitreal Injections, Male, Middle Aged, Postoperative Complications, Ranibizumab, Receptors, Vascular Endothelial Growth Factor, Recombinant Fusion Proteins, Retina, Retreatment, Retrospective Studies, Subretinal Fluid, Tomography, Optical Coherence, Treatment Outcome, Vascular Endothelial Growth Factor A, Visual Acuity, Wet Macular Degeneration}, issn = {1879-1891}, doi = {10.1016/j.ajo.2013.02.017}, author = {Bakall, Benjamin and Folk, James C and Boldt, H Culver and Sohn, Elliott H and Stone, Edwin M and Russell, Stephen R and Mahajan, Vinit B} } @article {91, title = {A biorepository for ophthalmic surgical specimens.}, journal = {Proteomics Clin Appl}, year = {2013}, month = {2013 Sep 24}, abstract = {

Biorepositories are collections of surgically obtained human tissues for current and future investigations of disease mechanisms, therapeutics, and diagnostics. In ophthalmology, a critical challenge is how to interface the operating room with the laboratory. To attain standards required for basic research, clinical and research teams must cooperate to collect, annotate, and store specimens that yield consistent results required for advanced molecular techniques. We developed an efficient platform for obtaining vitreous and other eye tissues from the operating room and transferring them to the lab. The platform includes a mobile lab cart for on-site tissue processing, a multi-user, web-based database for point-of-care phenotypic capture, and an integrated data tracking system for long-term storage. These biorepository instruments have proven essential for our studies in ophthalmic disease proteomics. This system can be implemented in other operating rooms and laboratories for a variety of biological tissues.

}, author = {Skeie, Jessica M and Tsang, Stephen H and Zande, Ryan Vande and Fickbohm, Macy M and Shah, Shaival S and Vallone, John G and Mahajan, Vinit B} } @article {93, title = {Combination Therapy for Neovascular Age-Related Macular Degeneration Refractory to Anti-Vascular Endothelial Growth Factor~Agents.}, journal = {Ophthalmology}, year = {2013}, month = {2013 May 25}, abstract = {

OBJECTIVE: To examine the outcomes of combination anti-vascular endothelial growth factor (VEGF) and photodynamic therapy (PDT) for the treatment of neovascular age-related macular degeneration (AMD) refractory to anti-VEGF monotherapy. DESIGN: Retrospective, interventional case series. PARTICIPANTS: Twenty-six eyes of 26 patients treated with anti-VEGF monotherapy for neovascular AMD with persistent subretinal or intraretinal fluid after at least 3 anti-VEGF injections in the 7 months before combination treatment. INTERVENTION: Combination anti-VEGF treatment and PDT. MAIN OUTCOME MEASURES: Visual acuity at 1 or 2, 3, and 6 months and central retinal thickness at 1 or 2, 3, and 6 months. Secondary outcome measures were change in number of fluid-free visits and interval between treatments in the 7 months before and 6 months after combination therapy. RESULTS: Statistically significant improvements in logarithm of the minimum angle of resolution visual acuities were present at 1 month (P~= 0.01) and 3 months (P~= 0.01). Significant decreases in central subfield retinal thickness on optic coherence tomography (OCT) were seen at 1 month (P~= 4{\texttimes}10(-5)), 3 months (P~= 3{\texttimes}10(-4)), and 6 months (P~= 4{\texttimes}10(-5)) as compared with precombination treatment OCT scans. The percentage of patient visits with no subretinal fluid increased from 0.5\% to 41\% after the initiation of combination therapy (P~= 1{\texttimes}10(-5)). The interval between treatments increased from once every 1.6 months in the 7 months before combination treatment to once every 2.7 months in the 6 months after combination treatment (P~= 0.002). No ocular complications attributable to PDT were seen. CONCLUSIONS: Rescue therapy with the combination of anti-VEGF and PDT in eyes that have failed anti-VEGF monotherapy resulted in a mean improvement in vision, a decreased central subfield retinal thickness, and an increase in fluid-free intervals. FINANCIAL DISCLOSURE(S): The author(s) have no proprietary or commercial interest in any materials discussed in this article.

}, author = {Tozer, Kevin and Roller, A Brock and Chong, Lawrence P and Sadda, Srinivas and Folk, James C and Mahajan, Vinit B and Russell, Stephen R and Boldt, H Culver and Sohn, Elliott H} } @article {755, title = {Elimination of infusion bubbles and uncontrolled reflux in the alcon constellation vitrectomy vision system.}, journal = {Retina}, volume = {33}, year = {2013}, month = {2013 Apr}, pages = {803-6}, abstract = {

PURPOSE: To identify the sources and management of 2 problems associated with the Alcon Constellation Vitrectomy (Alcon Laboratories, Inc) System: 1) infusion bubbles and 2) uncontrolled reflux.

METHODS: Surgical and analytical videos were evaluated to identify the source of intraoperative bubbles, which localized to the duckbill valve (DV). Intraoperatively, the authors modified the infusion tubing and its control by removing the DV. The DV was repurposed as a one-way valve to block reflux originating from the vitrectomy console.

RESULTS: Twenty consecutive 23-gauge vitrectomies in 20 eyes of 20 subjects from 2 surgeons (S.R.R. and E.H.S.) were reviewed. Infusion bubbles at the DV developed with each transitory tubing pressure drop upon opening of the infusion clamp. Removal of the DV from the infusion line eliminated infusion bubbles in 20 consecutive 23-gauge cases. Adding a one-way valve, which was fashioned from the DV, to the aspiration tubing, resulted in elimination of infusion bubbles and console-originated reflux in 20 eyes. Placement of the DV to block reflux eliminated both uncontrolled and purposeful console-originated reflux.

CONCLUSION: Intraoperative modification of Constellation tubing may eliminate two potentially harmful problems until manufacturer correction is instituted. Because the authors{\textquoteright} modified connections represent off-label connectivity, the manufacturer cannot contact potentially affected surgeons or suggest temporary alternative connectivity improvements.

}, keywords = {Gases, Humans, Intraoperative Complications, Microbubbles, Retinal Perforations, Video Recording, Vitrectomy, Vitreoretinal Surgery}, issn = {1539-2864}, doi = {10.1097/IAE.0b013e31826c20c6}, author = {Russell, Stephen R and Sohn, Elliott H and Boldt, H Culver and Folk, James C and Tarantola, Ryan M and Kay, Christine N and Mahajan, Vinit B} } @article {97, title = {Genome-wide generation and systematic phenotyping of knockout mice reveals new roles for many genes.}, journal = {Cell}, volume = {154}, year = {2013}, month = {2013 Jul 18}, pages = {452-64}, abstract = {

Mutations in whole organisms are powerful ways of interrogating gene function in a realistic context. We describe a program, the Sanger Institute Mouse Genetics Project, that provides a step toward the aim of knocking out all genes and screening each line for a broad range of traits. We found that hitherto unpublished genes were as likely to reveal phenotypes as known genes, suggesting that novel genes represent a rich resource for investigating the molecular basis of disease. We found many unexpected phenotypes detected only because we screened for them, emphasizing the value of screening all mutants for a wide range of traits. Haploinsufficiency and pleiotropy were both surprisingly common. Forty-two percent of genes were essential for viability, and these were less likely to have a paralog and more likely to contribute to a protein complex than other genes. Phenotypic data and more than 900 mutants are openly available for further analysis. PAPERCLIP:

}, keywords = {Animals, Disease, Disease Models, Animal, Female, Genes, Essential, Genetic Techniques, Genome-Wide Association Study, Male, Mice, Mice, Knockout, Phenotype}, author = {White, Jacqueline K and Gerdin, Anna-Karin and Karp, Natasha A and Ryder, Ed and Buljan, Marija and Bussell, James N and Salisbury, Jennifer and Clare, Simon and Ingham, Neil J and Podrini, Christine and Houghton, Richard and Estabel, Jeanne and Bottomley, Joanna R and Melvin, David G and Sunter, David and Adams, Niels C and Tannahill, David and Logan, Darren W and Macarthur, Daniel G and Flint, Jonathan and Mahajan, Vinit B and Tsang, Stephen H and Smyth, Ian and Watt, Fiona M and Skarnes, William C and Dougan, Gordon and Adams, David J and Ramirez-Solis, Ramiro and Bradley, Allan and Steel, Karen P} } @article {767, title = {Intraoperative sclerotomy-related retinal breaks during 23-gauge pars plana vitrectomy.}, journal = {Retina}, volume = {33}, year = {2013}, month = {2013 Jan}, pages = {136-42}, abstract = {

PURPOSE: To study the incidence and characteristics of intraoperative sclerotomy-related retinal breaks encountered during 23-gauge pars plana vitrectomy.

METHODS: A retrospective consecutive case series was assembled from the surgical logs and charts of patients who underwent 23-gauge pars plana vitrectomy. Demographic data and preoperative, intraoperative, and postoperative records were examined.

RESULTS: A total 548 eyes met the inclusion criteria. Of them, 145 eyes underwent pars plana vitrectomy for repair of a rhegmatogenous retinal detachment (RRD) and 403 eyes for other indications. Sclerotomy-related retinal breaks were found in 8 of 548 (1.45\%) eyes. No breaks were found in the 145 RRD eyes. In non-RRD cases, 8 of 403 (1.98\%) eyes had sclerotomy-related breaks. All breaks were adjacent to the superior sclerotomies. The incidence of postoperative retinal detachment was 0\% (0 of 403) in the non-RRD group. In eyes with breaks, the primary surgical indication was vitreomacular traction in six of eight eyes and epiretinal membrane in two of eight eyes. Posterior vitreous detachment was absent in six of eight eyes, and six of eight eyes were phakic. Eyes with vitreomacular traction had a significantly higher incidence of breaks (P < 0.0001). Eyes with a surgical indication other than RRD had a higher incidence of breaks, but this was not statistically significant when compared with eyes with RRD (P = 0.087).

CONCLUSION: Pars plana vitrectomy (23-gauge) is associated with a low incidence of sclerotomy-related retinal breaks and postoperative retinal detachments. Eyes with breaks are more likely to be phakic and without a preoperative posterior vitreous detachment. The presence of vitreomacular traction may be a risk factor for the development of intraoperative sclerotomy-related breaks.

}, keywords = {Aged, Aged, 80 and over, Female, Follow-Up Studies, Humans, Incidence, Intraoperative Complications, Male, Microsurgery, Middle Aged, Postoperative Complications, Retinal Detachment, Retinal Perforations, Retrospective Studies, Sclerostomy, Tomography, Optical Coherence, Visual Acuity, Vitrectomy}, issn = {1539-2864}, doi = {10.1097/IAE.0b013e31825e1d62}, author = {Tarantola, Ryan M and Tsui, Janet Y and Graff, Jordan M and Russell, Stephen R and Boldt, H Culver and Folk, James C and Mahajan, Vinit B} } @article {99, title = {Lymphocyte infiltration in CAPN5 autosomal dominant neovascular inflammatory vitreoretinopathy.}, journal = {Clin Ophthalmol}, volume = {7}, year = {2013}, month = {2013}, pages = {1339-45}, abstract = {

PURPOSE: To describe immunohistopathological findings in autosomal dominant neovascular inflammatory vitreoretinopathy (ADNIV).

METHODS: An enucleated eye specimen from a patient with Stage V ADNIV was examined using standard histopathological methods and lymphocyte markers.

RESULTS: A c.731T\>C CAPN5 mutation resulted in a p.Leu244Pro substitution in calpain-5. The eye showed exudative retinal detachment and neovascularization, intraocular fibrosis, and features of phthisis bulbi. Chronic inflammatory CD3-positive cell infiltrates were identified throughout the uvea, vitreous and retina, consistent with chronic uveitis.

CONCLUSION: Mutations in CAPN5 trigger autoimmune uveitis characterized by inflammatory T-cells and severe neovascularization.

}, author = {Mahajan, Vinit B and Lin, Jonathan H} } @article {101, title = {Mcph1-deficient mice reveal a role for MCPH1 in otitis media.}, journal = {PLoS One}, volume = {8}, year = {2013}, month = {2013}, pages = {e58156}, abstract = {

Otitis media is a common reason for hearing loss, especially in children. Otitis media is a multifactorial disease and environmental factors, anatomic dysmorphology and genetic predisposition can all contribute to its pathogenesis. However, the reasons for the variable susceptibility to otitis media are elusive. MCPH1 mutations cause primary microcephaly in humans. So far, no hearing impairment has been reported either in the MCPH1 patients or mouse models with Mcph1 deficiency. In this study, Mcph1-deficient (Mcph1(tm1a) (/tm1a) ) mice were produced using embryonic stem cells with a targeted mutation by the Sanger Institute\&$\#$39;s Mouse Genetics Project. Auditory brainstem response measurements revealed that Mcph1(tm1a) (/tm1a) mice had mild to moderate hearing impairment with around 70\% penetrance. We found otitis media with effusion in the hearing-impaired Mcph1(tm1a) (/tm1a) mice by anatomic and histological examinations. Expression of Mcph1 in the epithelial cells of middle ear cavities supported its involvement in the development of otitis media. Other defects of Mcph1(tm1a) (/tm1a) mice included small skull sizes, increased micronuclei in red blood cells, increased B cells and ocular abnormalities. These findings not only recapitulated the defects found in other Mcph1-deficient mice or MCPH1 patients, but also revealed an unexpected phenotype, otitis media with hearing impairment, which suggests Mcph1 is a new gene underlying genetic predisposition to otitis media.

}, author = {Chen, Jing and Ingham, Neil and Clare, Simon and Raisen, Claire and Vancollie, Valerie E and Ismail, Ozama and McIntyre, Rebecca E and Tsang, Stephen H and Mahajan, Vinit B and Dougan, Gordon and Adams, David J and White, Jacqueline K and Steel, Karen P} } @article {103, title = {Mutations in Extracellular Matrix Genes NID1 and LAMC1 Cause Autosomal Dominant Dandy-Walker Malformation and Occipital Cephaloceles.}, journal = {Hum Mutat}, year = {2013}, month = {2013 May 14}, abstract = {

We performed whole-exome sequencing of a family with autosomal dominant Dandy-Walker malformation and occipital cephaloceles and detected a mutation in the extracellular matrix (ECM) protein-encoding gene NID1. In a second family, protein interaction network analysis identified a mutation in LAMC1, which encodes a NID1-binding partner. Structural modeling of the NID1-LAMC1 complex demonstrated that each mutation disrupts the interaction. These findings implicate the ECM in the pathogenesis of Dandy-Walker spectrum disorders.

}, author = {Darbro, Benjamin W and Mahajan, Vinit B and Gakhar, Lokesh and Skeie, Jessica M and Campbell, Elizabeth and Wu, Shu and Bing, Xinyu and Millen, Kathleen J and Dobyns, William B and Kessler, John A and Jalali, Ali and Cremer, James and Segre, Alberto and Manak, J Robert and Aldinger, Kimerbly A and Suzuki, Satoshi and Natsume, Nagato and Ono, Maya and Hai, Huynh Dai and Viet, Le Thi and Loddo, Sara and Valente, Enza M and Bernardini, Laura and Ghonge, Nitin and Ferguson, Polly J and Bassuk, Alexander G} } @article {105, title = {PRICKLE1 interaction with SYNAPSIN I reveals a role in autism spectrum disorders.}, journal = {PLoS One}, volume = {8}, year = {2013}, month = {2013}, pages = {e80737}, abstract = {

The frequent comorbidity of Autism Spectrum Disorders (ASDs) with epilepsy suggests a shared underlying genetic susceptibility; several genes, when mutated, can contribute to both disorders. Recently, PRICKLE1 missense mutations were found to segregate with ASD. However, the mechanism by which mutations in this gene might contribute to ASD is unknown. To elucidate the role of PRICKLE1 in ASDs, we carried out studies in Prickle1(+/-) mice and Drosophila, yeast, and neuronal cell lines. We show that mice with Prickle1 mutations exhibit ASD-like behaviors. To find proteins that interact with PRICKLE1 in the central nervous system, we performed a yeast two-hybrid screen with a human brain cDNA library and isolated a peptide with homology to SYNAPSIN I (SYN1), a protein involved in synaptogenesis, synaptic vesicle formation, and regulation of neurotransmitter release. Endogenous Prickle1 and Syn1 co-localize in neurons and physically interact via the SYN1 region mutated in ASD and epilepsy. Finally, a mutation in PRICKLE1 disrupts its ability to increase the size of dense-core vesicles in PC12 cells. Taken together, these findings suggest PRICKLE1 mutations contribute to ASD by disrupting the interaction with SYN1 and regulation of synaptic vesicles.

}, author = {Paemka, Lily and Mahajan, Vinit B and Skeie, Jessica M and Sowers, Levi P and Ehaideb, Salleh N and Gonzalez-Alegre, Pedro and Sasaoka, Toshikuni and Tao, Hirotaka and Miyagi, Asuka and Ueno, Naoto and Takao, Keizo and Miyakawa, Tsuyoshi and Wu, Shu and Darbro, Benjamin W and Ferguson, Polly J and Pieper, Andrew A and Britt, Jeremiah K and Wemmie, John A and Rudd, Danielle S and Wassink, Thomas and El-Shanti, Hatem and Mefford, Heather C and Carvill, Gemma L and Manak, J Robert and Bassuk, Alexander G} } @article {107, title = {Proteomic interactions in the mouse vitreous-retina complex.}, journal = {PLoS One}, volume = {8}, year = {2013}, month = {2013}, pages = {e82140}, abstract = {

PURPOSE: Human vitreoretinal diseases are due to presumed abnormal mechanical interactions between the vitreous and retina, and translational models are limited. This study determined whether nonstructural proteins and potential retinal biomarkers were expressed by the normal mouse vitreous and retina.

METHODS: Vitreous and retina samples from mice were collected by evisceration and analyzed by liquid chromatography-tandem mass spectrometry. Identified proteins were further analyzed for differential expression and functional interactions using bioinformatic software.

RESULTS: We identified 1,680 unique proteins in the retina and 675 unique proteins in the vitreous. Unbiased clustering identified protein pathways that distinguish retina from vitreous including oxidative phosphorylation and neurofilament cytoskeletal remodeling, whereas the vitreous expressed oxidative stress and innate immunology pathways. Some intracellular protein pathways were found in both retina and vitreous, such as glycolysis and gluconeogenesis and neuronal signaling, suggesting proteins might be shuttled between the retina and vitreous. We also identified human disease biomarkers represented in the mouse vitreous and retina, including carbonic anhydrase-2 and 3, crystallins, macrophage inhibitory factor, glutathione peroxidase, peroxiredoxins, S100 precursors, and von Willebrand factor.

CONCLUSIONS: Our analysis suggests the vitreous expresses nonstructural proteins that functionally interact with the retina to manage oxidative stress, immune reactions, and intracellular proteins may be exchanged between the retina and vitreous. This novel proteomic dataset can be used for investigating human vitreoretinopathies in mouse models. Validation of vitreoretinal biomarkers for human ocular diseases will provide a critical tool for diagnostics and an avenue for therapeutics.

}, author = {Skeie, Jessica M and Mahajan, Vinit B} } @article {741, title = {Surgical management of fibrotic encapsulation of the fluocinolone acetonide implant in CAPN5-associated proliferative vitreoretinopathy.}, journal = {Clin Ophthalmol}, volume = {7}, year = {2013}, month = {2013}, pages = {1093-8}, abstract = {

OBJECTIVE: To review fibrosis of fluocinolone acetonide (FA) implants in subjects with CAPN5 autosomal dominant neovascular inflammatory vitreoretinopathy (ADNIV).

METHODS: A retrospective case series was assembled from ADNIV patients in which there was fibrotic encapsulation of a fluocinolone acetonide implant. CAPN5 genotypes and surgical repair techniques were reviewed.

RESULTS: Two eyes of two ADNIV patients developed a fibrotic capsule over the fluocinolone acetonide implant. Both patients had Stage IV disease. Patient A had a c.731T > C mutation in the CAPN5 gene and patient B had a c.728G > T mutation. The fibrotic membrane was surgically excised and the implant function was restored.

CONCLUSION: The exuberant fibrotic response in later stages of ADNIV may be resistant to local immunosuppression with steroids. Surgical excision of fibrotic membranes over FA implants can reestablish local steroid delivery in cases of severe proliferative vitreoretinopathy.

}, issn = {1177-5467}, doi = {10.2147/OPTH.S43939}, author = {Tlucek, Paul S and Folk, James C and Sobol, Warren M and Mahajan, Vinit B} } @article {111, title = {Translational vitreous proteomics.}, journal = {Proteomics Clin Appl}, year = {2013}, month = {2013 Sep 24}, abstract = {

The vitreous is an extracellular matrix that is still poorly understood. Although many constituents and characteristics have been previously determined, there are many attributes still being discovered. Currently, using protein arrays, MS, and bioinformatics, the vitreous provides a wealth of knowledge regarding ocular diseases and potential targets for personalized therapeutics.

}, author = {Mahajan, Vinit B and Skeie, Jessica M} } @article {113, title = {23-gauge pediatric vitrectomy using limbus-based trocar-cannulas.}, journal = {Retina (Philadelphia, Pa.)}, volume = {32}, year = {2012}, month = {2012 May}, pages = {1023-7}, keywords = {Catheters, Child, Child, Preschool, Female, Glaucoma Drainage Implants, Humans, Infant, Male, Microsurgery, Retinal Detachment, Retrospective Studies, Vitrectomy, Vitreous Hemorrhage}, author = {Kay, Christine N and Quiram, Polly H and Mahajan, Vinit B} } @article {115, title = {Calpain-5 mutations cause autoimmune uveitis, retinal neovascularization, and photoreceptor degeneration.}, journal = {PLoS Genet}, volume = {8}, year = {2012}, month = {2012}, pages = {e1003001}, abstract = {

Autosomal dominant neovascular inflammatory vitreoretinopathy (ADNIV) is an autoimmune condition of the eye that sequentially mimics uveitis, retinitis pigmentosa, and proliferative diabetic retinopathy as it progresses to complete blindness. We identified two different missense mutations in the CAPN5 gene in three ADNIV kindreds. CAPN5 encodes calpain-5, a calcium-activated cysteine protease that is expressed in retinal photoreceptor cells. Both mutations cause mislocalization from the cell membrane to the cytosol, and structural modeling reveals that both mutations lie within a calcium-sensitive domain near the active site. CAPN5 is only the second member of the large calpain gene family to cause a human Mendelian disorder, and this is the first report of a specific molecular cause for autoimmune eye disease. Further investigation of these mutations is likely to provide insight into the pathophysiologic mechanisms of common diseases ranging from autoimmune disorders to diabetic retinopathy.

}, keywords = {Amino Acid Sequence, Base Sequence, Calpain, Cell Line, Cells, Cultured, Choroid Diseases, Exome, Exons, Eye Diseases, Hereditary, Female, Gene Expression, Genetic Linkage, Humans, Male, Models, Molecular, Molecular Sequence Data, Mutation, Pedigree, Phenotype, Photoreceptor Cells, Vertebrate, Protein Conformation, Protein Transport, Retinal Degeneration, Sequence Alignment}, author = {Mahajan, Vinit B and Skeie, Jessica M and Bassuk, Alexander G and Fingert, John H and Braun, Terry A and Daggett, Heather T and Folk, James C and Sheffield, Val C and Stone, Edwin M} } @article {117, title = {Disruption of mouse Cenpj, a regulator of centriole biogenesis, phenocopies Seckel syndrome.}, journal = {PLoS Genet}, volume = {8}, year = {2012}, month = {2012}, pages = {e1003022}, abstract = {

Disruption of the centromere protein J gene, CENPJ (CPAP, MCPH6, SCKL4), which is a highly conserved and ubiquitiously expressed centrosomal protein, has been associated with primary microcephaly and the microcephalic primordial dwarfism disorder Seckel syndrome. The mechanism by which disruption of CENPJ causes the proportionate, primordial growth failure that is characteristic of Seckel syndrome is unknown. By generating a hypomorphic allele of Cenpj, we have developed a mouse (Cenpj(tm/tm)) that recapitulates many of the clinical features of Seckel syndrome, including intrauterine dwarfism, microcephaly with memory impairment, ossification defects, and ocular and skeletal abnormalities, thus providing clear confirmation that specific mutations of CENPJ can cause Seckel syndrome. Immunohistochemistry revealed increased levels of DNA damage and apoptosis throughout Cenpj(tm/tm) embryos and adult mice showed an elevated frequency of micronucleus induction, suggesting that Cenpj-deficiency results in genomic instability. Notably, however, genomic instability was not the result of defective ATR-dependent DNA damage signaling, as is the case for the majority of genes associated with Seckel syndrome. Instead, Cenpj(tm/tm) embryonic fibroblasts exhibited irregular centriole and centrosome numbers and mono- and multipolar spindles, and many were near-tetraploid with numerical and structural chromosomal abnormalities when compared to passage-matched wild-type cells. Increased cell death due to mitotic failure during embryonic development is likely to contribute to the proportionate dwarfism that is associated with CENPJ-Seckel syndrome.

}, keywords = {Animals, Apoptosis, Centrioles, DNA Damage, Dwarfism, Embryonic Development, Genomic Instability, Mice, Mice, Transgenic, Microcephaly, Microtubule-Associated Proteins, Mitosis, Mitotic Spindle Apparatus, Mutation, Signal Transduction}, author = {McIntyre, Rebecca E and Lakshminarasimhan Chavali, Pavithra and Ismail, Ozama and Carragher, Damian M and Sanchez-Andrade, Gabriela and Forment, Josep V and Fu, Beiyuan and Del Castillo Velasco-Herrera, Martin and Edwards, Andrew and van der Weyden, Louise and Yang, Fengtang and Ramirez-Solis, Ramiro and Estabel, Jeanne and Gallagher, Ferdia A and Logan, Darren W and Arends, Mark J and Tsang, Stephen H and Mahajan, Vinit B and Scudamore, Cheryl L and White, Jacqueline K and Jackson, Stephen P and Gergely, Fanni and Adams, David J} } @article {775, title = {Infrared imaging and optical coherence tomography reveal early-stage astrocytic hamartomas not detectable by fundoscopy.}, journal = {Am J Ophthalmol}, volume = {153}, year = {2012}, month = {2012 May}, pages = {883-889.e2}, abstract = {

PURPOSE: To describe and correlate the features of astrocytic hamartomas using multimodal imaging.

DESIGN: Prospective, noncomparative, observational case series.

METHODS: This was a single-center study of 4 patients (8 eyes) with tuberous sclerosis complex. A complete ophthalmologic examination, fundus photography, fundus autofluorescence (FAF), infrared imaging, and spectral-domain optical coherence tomography (SD-OCT) were performed for each patient. Images from each modality were analyzed and compared.

RESULTS: In 2 patients, infrared imaging and SD-OCT detected occult retinal astrocytic hamartomas that were not observed on clinical examination or color fundus photography. FAF demonstrated the greatest contrast between lesions and surrounding retina but failed to identify 1 occult lesion that was detected with infrared imaging and SD-OCT. SD-OCT revealed lesions arising from the retinal nerve fiber layer with overlying vitreous adhesions, hyperreflective dots, and optically empty spaces at all depths of the tumor. Hamartomas were hyporeflective on infrared imaging and hypoautofluorescent on FAF. FAF of some lesions demonstrated hyperautofluorescent spots.

CONCLUSIONS: Infrared imaging and SD-OCT aid in the detection of astrocytic hamartomas that are not visible on clinical examination or color fundus photography. SD-OCT enhances visualization of structural details. FAF is a useful adjunctive test to obtain greater contrast between lesions and surrounding retina. The ability to monitor structural changes over time in astrocytic hamartomas using SD-OCT may be beneficial for monitoring the success of systemic chemotherapy in the treatment of various tuberous sclerosis tumors.

}, keywords = {Adolescent, Astrocytes, Child, Diagnostic Imaging, Female, Fluorescein Angiography, Humans, Infrared Rays, Male, Ophthalmoscopes, Prospective Studies, Retinal Neoplasms, Tomography, Optical Coherence, Tuberous Sclerosis}, issn = {1879-1891}, doi = {10.1016/j.ajo.2011.10.033}, author = {Xu, Luna and Burke, Tomas R and Greenberg, Jonathan P and Mahajan, Vinit B and Tsang, Stephen H} } @article {121, title = {Inhibition of Neovascularization but Not Fibrosis With the Fluocinolone Acetonide Implant in Autosomal Dominant Neovascular Inflammatory Vitreoretinopathy.}, journal = {Archives of ophthalmology}, year = {2012}, month = {2012 Jul 9}, pages = {1-7}, abstract = {

OBJECTIVE To review the effect of the fluocinolone acetonide implant in subjects with autosomal dominant neovascular inflammatory vitreoretinopathy (ADNIV), an inherited autoimmune uveitis. METHODS A retrospective case series was assembled from patients with ADNIV who received fluocinolone acetonide implants. Visual acuity and features of ADNIV, including inflammatory cells, neovascularization, fibrosis, and cystoid macular edema, were reviewed. RESULTS Nine eyes of 5 related patients with ADNIV with uncontrolled inflammation were reviewed. Follow-up ranged from 21.7 to 56.7 months. Visual acuity at implantation ranged from 20/40 to hand motion. Preoperatively, 8 eyes had vitreous cells (a ninth had diffuse vitreous hemorrhage). Eight eyes had cystoid macular edema, 7 had an epiretinal membrane, and 3 had retinal neovascularization. Following implantation, vitreous cells resolved in all eyes and neovascularization regressed or failed to develop. Central macular thickness improved in 4 eyes. During the postoperative course, however, visual acuity continued to deteriorate, with visual acuity at the most recent examination ranging from 20/60 to no light perception. There was also progressive intraocular fibrosis and phthisis in 1 case. Four eyes underwent cataract surgery. Six of the 7 eyes without previous glaucoma surgery had elevated intraocular pressure at some point, and 3 of these required glaucoma surgery. CONCLUSIONS The fluocinolone acetonide implant may inhibit specific features of ADNIV such as inflammatory cells and neovascularization but does not stabilize long-term vision, retinal thickening, or fibrosis. All eyes in this series required cataract extraction, and more than half required surgical intervention for glaucoma. Further studies may identify additional therapies and any benefit of earlier implantation.

}, author = {Tlucek, Paul S and Folk, James C and Orien, Jason A and Stone, Edwin M and Mahajan, Vinit B} } @article {765, title = {Intravitreal bevacizumab for peripapillary choroidal neovascular membranes.}, journal = {Arch Ophthalmol}, volume = {130}, year = {2012}, month = {2012 Aug}, pages = {1073-5}, keywords = {Adult, Aged, Aged, 80 and over, Angiogenesis Inhibitors, Antibodies, Monoclonal, Humanized, Bevacizumab, Choroidal Neovascularization, Female, Fluorescein Angiography, Humans, Intravitreal Injections, Macular Degeneration, Male, Middle Aged, Retreatment, Subretinal Fluid, Tomography, Optical Coherence, Treatment Outcome, Vascular Endothelial Growth Factor A, Visual Acuity}, issn = {1538-3601}, doi = {10.1001/archophthalmol.2012.465}, author = {Davis, Andrew S and Folk, James C and Russell, Stephen R and Sohn, Elliott H and Sohn, Elliot H and Boldt, H Culver and Stone, Edwin M and Mahajan, Vinit B} } @article {127, title = {Monozygotic twins with CAPN5 autosomal dominant neovascular inflammatory vitreoretinopathy.}, journal = {Clin Ophthalmol}, volume = {6}, year = {2012}, month = {2012}, pages = {2037-44}, abstract = {

BACKGROUND: The purpose of this study was to describe the clinical findings in a set of monozygotic twins with autosomal dominant neovascular inflammatory vitreoretinopathy (ADNIV) over a 23-year period.

METHODS: A pair of female twins were examined between 26 and 49 years of age. The concordance and discordance of their clinical features were determined. The CAPN5 gene was sequenced using genomic DNA.

RESULTS: Both twins of an affected father demonstrated Stage I ADNIV with mild vitreous cells and a negative b-wave on electroretinography. Genetic analysis confirmed a guanine to thymine nucleotide (c.728G\>T, pArg243Leu) mutation in the CAPN5 gene. Over the course of 23 years, each twin progressed to stage III disease, showing posterior uveitis, cystoid macular edema, intraocular fibrosis, early retinal neovascularization, retinal degeneration, and cataract. Disease progression varied moderately between each twin and was asymmetrical between eyes. Twin A had 20/70 and 20/125 in the right and left eye, respectively, and underwent vitrectomy surgery and intravitreal injections with bevacizumab for recurrent cystoid macular edema. Twin B maintained 20/20 and 20/40 in the right and left eye, respectively without intervention.

CONCLUSION: There was asymmetry between the eyes and some discordance in the rate of disease progression in these monozygotic twins with ADNIV. The overall high disease concordance suggests genetic factors play a major role in clinical manifestations in CAPN5 vitreoretinopathy.

}, author = {Rowell, Hannah A and Bassuk, Alexander G and Mahajan, Vinit B} } @article {129, title = {Proteomic analysis of vitreous biopsy techniques.}, journal = {Retina}, volume = {32}, year = {2012}, month = {2012 Nov-Dec}, pages = {2141-9}, abstract = {

PURPOSE: To compare vitreous biopsy methods using analysis platforms used in proteomics biomarker discovery.

METHODS: Vitreous biopsies from 10 eyes were collected sequentially using a 23-gauge needle and a 23-gauge vitreous cutter instrument. Paired specimens were evaluated by UV absorbance spectroscopy, sodium dodecyl sulfate-polyacrylamide gel electrophoresis, and liquid chromatography tandem mass spectrometry (LC-MS/MS).

RESULTS: The total protein concentration obtained with a needle and vitrectomy instrument biopsy averaged 1.10 mg/mL (standard error of the mean = 0.35) and 1.13 mg/mL (standard error of the mean = 0.25), respectively. In eight eyes with low or medium viscidity, there was a very high correlation (R = 0.934) between the biopsy methods. When data from 2 eyes with high viscidity vitreous were included, the correlation was reduced (R = 0.704). The molecular weight protein sodium dodecyl sulfate-polyacrylamide gel electrophoresis profiles of paired needle and vitreous cutter samples were similar, except for a minority of pairs with single band intensity variance. Using LC-MS/MS, equivalent peptides were identified with similar frequencies (R \≥ 0.90) in paired samples.

CONCLUSION: Proteins and peptides collected from vitreous needle biopsies are nearly equivalent to those obtained from a vitreous cutter instrument. This study suggests both techniques may be used for most proteomic and biomarker discovery studies of vitreoretinal diseases, although a minority of proteins and peptides may differ in concentration.

}, keywords = {Adolescent, Aged, Biological Markers, Biopsy, Chromatography, Liquid, Electrophoresis, Polyacrylamide Gel, Eye Diseases, Eye Proteins, Female, Humans, Male, Middle Aged, Proteomics, Spectrophotometry, Ultraviolet, Tandem Mass Spectrometry, Vitrectomy, Vitreous Body, Young Adult}, author = {Skeie, Jessica M and Brown, Eric N and Martinez, Harryl D and Russell, Stephen R and Birkholz, Emily S and Folk, James C and Boldt, H Culver and Gehrs, Karen M and Stone, Edwin M and Wright, Michael E and Mahajan, Vinit B} } @article {777, title = {Re: Intraoperative choroidal detachment during 23-gauge vitrectomy.}, journal = {Retina}, volume = {32}, year = {2012}, month = {2012 Feb}, pages = {411}, keywords = {Choroid Diseases, Drainage, Humans, Incidence, Intraoperative Complications, Microsurgery, Retinal Detachment, Retinal Perforations, Risk Factors, Vitrectomy}, issn = {1539-2864}, doi = {10.1097/IAE.0b013e3182398122}, author = {Tarantola, Ryan M and Mahajan, Vinit B} } @article {529, title = {Subretinal injection of gene therapy vectors and stem cells in the perinatal mouse eye}, journal = {Journal of visualized experiments: JoVE}, year = {2012}, author = {Wert, Katherine J and Skeie, Jessica M and Davis, Richard J and Tsang, Stephen H and Mahajan, Vinit B} } @article {135, title = {TEMPORAL APPROACH FOR SMALL-GAUGE PARS PLANA VITRECTOMY COMBINED WITH ANTERIOR SEGMENT SURGERY.}, journal = {Retina (Philadelphia, Pa.)}, year = {2012}, month = {2012 Apr 16}, abstract = {

PURPOSE:: To describe our preliminary experience with temporal small-gauge pars plana vitrectomy (PPV) techniques used to treat anterior and posterior segment pathology. METHODS:: A retrospective consecutive case review of patients who underwent temporal PPV was performed. Patients underwent combined temporal small-gauge PPV and anterior segment intervention. Pre- and postoperative visual acuity, intraocular pressure, surgical indications, intraoperative techniques, postoperative course, and a survey to determine how the change in position affected surgery were examined. RESULTS:: Temporal PPV was performed on 23 eyes with various posterior segment indications and anterior segment pathologies including cataract, pupillary membrane, endophthalmitis, superior filtering blebs, and anterior vitreous membranes. In 20 eyes, 23-gauge instruments were used, and in 3 eyes, 25-gauge instruments were used. Mean postoperative follow-up duration was 7.6 \± 5.0 months (range, 3-22 months). Surgical objectives were achieved in all cases, and no complications occurred in any study eye. Preoperative logarithm of the minimum angle of resolution mean visual acuity was 1.89 \± 0.76 and improved significantly on postoperative Week 1 (1.45 \± 0.81, P = 0.0003), Month 1 (1.13 \± 0.86, P = 0.0001), and at final follow-up (0.88 \± 0.79, P = 0.0001). There was no significant difference in preoperative and postoperative intraocular pressures. Surgeon surveys indicated significant advantages with a temporal approach for each anterior segment indication, no significant differences in performing the basic surgical steps of PPV, and relative ease of adopting this technique. CONCLUSION:: Performing PPV from the temporal position seems to be advantageous in cases combining posterior and anterior segment surgery such as cataract extraction, pupillary membrane dissection, preservation of superior conjunctival blebs, and trimanual vitrectomy.

}, author = {Tarantola, Ryan M and Graff, Jordan M and Somani, Rizwan and Mahajan, Vinit B} } @article {781, title = {Automated discovery and quantification of image-based complex phenotypes: a twin study of drusen phenotypes in age-related macular degeneration.}, journal = {Invest Ophthalmol Vis Sci}, volume = {52}, year = {2011}, month = {2011 Nov 25}, pages = {9195-206}, abstract = {

PURPOSE: Determining the relationships between phenotype and genotype of many disorders can improve clinical diagnoses, identify disease mechanisms, and enhance therapy. Most genetic disorders result from interaction of many genes that obscure the discovery of such relationships. The hypothesis for this study was that image analysis has the potential to enable formalized discovery of new visible phenotypes. It was tested in twins affected with age-related macular degeneration (AMD).

METHODS: Fundus images from 43 monozygotic (MZ) and 32 dizygotic (DZ) twin pairs with AMD were examined. First, soft and hard drusen were segmented. Then newly defined phenotypes were identified by using drusen distribution statistics that significantly separate MZ from DZ twins. The ACE model was used to identify the contributions of additive genetic (A), common environmental (C), and nonshared environmental (E) effects on drusen distribution phenotypes.

RESULTS: Four drusen distribution characteristics significantly separated MZ from DZ twin pairs. One encoded the quantity, and the remaining three encoded the spatial distribution of drusen, achieving a zygosity prediction accuracy of 76\%, 74\%, 68\%, and 68\%. Three of the four phenotypes had a 55\% to 77\% genetic effect in an AE model, and the fourth phenotype showed a nonshared environmental effect (E model).

CONCLUSIONS: Computational discovery of genetically determined features can reveal quantifiable AMD phenotypes that are genetically determined without explicitly linking them to specific genes. In addition, it can identify phenotypes that appear to result predominantly from environmental exposure. The approach is rapid and unbiased, suitable for large datasets, and can be used to reveal unknown phenotype-genotype relationships.

}, keywords = {Aged, 80 and over, Diseases in Twins, Female, Genetic Predisposition to Disease, Genotype, Humans, Macular Degeneration, Male, Phenotype, Registries, Retinal Drusen, Twins, Dizygotic, Twins, Monozygotic}, issn = {1552-5783}, doi = {10.1167/iovs.10-6793}, author = {Quellec, Gw{\'e}nol{\'e} and Russell, Stephen R and Seddon, Johanna M and Reynolds, Robyn and Scheetz, Todd and Mahajan, Vinit B and Stone, Edwin M and Abr{\`a}moff, Michael D} } @article {137, title = {Bilateral intravitreal injection of antivascular endothelial growth factor therapy.}, journal = {Retina (Philadelphia, Pa.)}, volume = {31}, year = {2011}, month = {2011 Jan}, pages = {31-5}, abstract = {

The purpose of this study was to review adverse events and patient preference after bilateral intravitreal injection of antibodies to vascular endothelial growth factor.

}, keywords = {Aged, Aged, 80 and over, Antibodies, Monoclonal, Case-Control Studies, Drug Administration Schedule, Drug Combinations, Female, Follow-Up Studies, Humans, Incidence, Injections, Intraocular, Macular Degeneration, Male, Middle Aged, Myocardial Infarction, Patient Preference, Retrospective Studies, Vascular Endothelial Growth Factor A, Vitreous Body}, author = {Mahajan, Vinit B and Elkins, Kori A and Russell, Stephen R and Boldt, H Culver and Gehrs, Karen M and Weingeist, Thomas A and Stone, Edwin M and Abr{\`a}moff, Michael D and Liu, Dawei and Folk, James C} } @article {139, title = {Dissection of human vitreous body elements for proteomic analysis.}, journal = {Journal of visualized experiments : JoVE}, year = {2011}, month = {2011}, abstract = {

The vitreous is an optically clear, collagenous extracellular matrix that fills the inside of the eye and overlies the retina. (1,2) Abnormal interactions between vitreous substructures and the retina underlie several vitreoretinal diseases, including retinal tear and detachment, macular pucker, macular hole, age-related macular degeneration, vitreomacular traction, proliferative vitreoretinopathy, proliferative diabetic retinopathy, and inherited vitreoretinopathies. (1,2) The molecular composition of the vitreous substructures is not known. Since the vitreous body is transparent with limited surgical access, it has been difficult to study its substructures at the molecular level. We developed a method to separate and preserve these tissues for proteomic and biochemical analysis. The dissection technique in this experimental video shows how to isolate vitreous base, anterior hyaloid, vitreous core, and vitreous cortex from postmortem human eyes. One-dimensional SDS-PAGE analyses of each vitreous component showed that our dissection technique resulted in four unique protein profiles corresponding to each substructure of the human vitreous body. Identification of differentially compartmentalized proteins will reveal candidate molecules underlying various vitreoretinal diseases.

}, keywords = {Dissection, Electrophoresis, Polyacrylamide Gel, Humans, Proteomics, Vitreous Body}, author = {Skeie, Jessica M and Mahajan, Vinit B} } @article {141, title = {Evisceration of mouse vitreous and retina for proteomic analyses.}, journal = {Journal of visualized experiments : JoVE}, year = {2011}, month = {2011}, abstract = {

While the mouse retina has emerged as an important genetic model for inherited retinal disease, the mouse vitreous remains to be explored. The vitreous is a highly aqueous extracellular matrix overlying the retina where intraocular as well as extraocular proteins accumulate during disease.(1-3) Abnormal interactions between vitreous and retina underlie several diseases such as retinal detachment, proliferative diabetic retinopathy, uveitis, and proliferative vitreoretinopathy.(1,4) The relative mouse vitreous volume is significantly smaller than the human vitreous (Figure 1), since the mouse lens occupies nearly 75\% of its eye.(5) This has made biochemical studies of mouse vitreous challenging. In this video article, we present a technique to dissect and isolate the mouse vitreous from the retina, which will allow use of transgenic mouse models to more clearly define the role of this extracellular matrix in the development of vitreoretinal diseases.

}, keywords = {Animals, Eye Evisceration, Eye Proteins, Mice, Models, Animal, Proteomics, Retina, Vitreous Body}, author = {Skeie, Jessica M and Tsang, Stephen H and Mahajan, Vinit B} } @article {143, title = {INTRAOPERATIVE CHOROIDAL DETACHMENT DURING 23-GAUGE VITRECTOMY.}, journal = {Retina (Philadelphia, Pa.)}, year = {2011}, month = {2011 Jan 26}, abstract = {

PURPOSE:: To review intraoperative choroidal detachments during 23-gauge vitrectomy and examine possible mechanism(s) involved. METHODS:: A retrospective consecutive case review of 23-gauge vitrectomies was performed. Main outcomes included choroidal detachment incidence, location, extent, relation to infusion cannula, and postoperative course. Laboratory study of human donor eyes was conducted by placing 23-gauge cannulas at various angles through the pars plana and injecting viscoelastic material after cannula retraction. RESULTS:: Among 338 consecutive 23-gauge vitrectomy cases, 12 (3.55\%) intraoperative choroidal detachments occurred. These included 6 (1.77\%) serous detachments, 4 (1.18\%) limited hemorrhagic detachments, and 1 case each of gas and silicone oil during an exchange. In four of six serous detachments and three of four hemorrhagic detachments, the detachment originated from the infusion cannula site. Intraoperative infusion cannula retraction (5 of 12 cases) and blockage (2 of 12 cases) caused transient hypotony. All cases of serous, hemorrhagic, and gas detachment resolved without intervention. Cannulas were placed at various angles to the sclera in human donor eyes. Choroidal detachments were produced injecting viscoelastic material through obliquely placed cannulas after 1 mm of retraction. CONCLUSION:: Infusion cannula retraction is an important mechanism and risk factor for the development of intraoperative choroidal detachment during 23-gauge vitrectomy. Precautions to prevent retraction and intraoperative repositioning may help avoid this complication.

}, author = {Tarantola, Ryan M and Folk, James C and Shah, Shaival S and Boldt, H Culver and Abr{\`a}moff, Michael D and Russell, Stephen R and Mahajan, Vinit B} } @article {145, title = {INTRAVITREAL BEVACIZUMAB FOR TREATMENT OF PROLIFERATIVE AND NONPROLIFERATIVE TYPE 2 IDIOPATHIC MACULAR TELANGIECTASIA.}, journal = {Retina (Philadelphia, Pa.)}, year = {2011}, month = {2011 May 21}, abstract = {

PURPOSE:: To determine the effect of treatment with intravitreal bevacizumab on retinal thickness and visual acuity in the nonproliferative and proliferative forms of Type 2 idiopathic macular telangiectasia. METHODS:: Retrospective chart review of clinic patients treated with bevacizumab for macular telangiectasia Type 2. Treatment was performed until no further changes were seen after repeated bevacizumab injections. All patients had Snellen visual acuity testing, fundus fluorescein angiography, and measurement of central macular thickness by optical coherence tomography at baseline. Visual acuity and central macular thickness were recorded at follow-up visits. RESULTS:: Fourteen eyes of 10 patients were included. In 5 eyes with nonproliferative macular telangiectasia Type 2, average follow-up was 17 months (\±7 months), and no eye demonstrated improvement in visual acuity or decrease in central macular thickness at final follow-up compared with baseline. In 9 eyes with proliferative disease, follow-up averaged 17 months (\±9 months). At 6 weeks, central macular thickness decreased 63 μm (\±58 μm), and acuity improved 1.7 lines (\±2 lines). At final follow-up, central macular thickness decreased 48 μm (\±89 μm) and acuity improved 1.1 lines (\±3 lines). Subretinal neovascularization resolved in eight of nine eyes with proliferative disease after treatment. CONCLUSION:: Bevacizumab did not improve acuity or reduce retinal thickness in nonproliferative macular telangiectasia Type 2 at final follow-up. In proliferative macular telangiectasia Type 2, bevacizumab caused involution of neovascularization and improved visual acuity.

}, author = {Roller, A Brock and Folk, James C and Patel, Narendra M and Boldt, H Culver and Russell, Stephen R and Abr{\`a}moff, Michael D and Mahajan, Vinit B} } @article {147, title = {Mouse eye enucleation for remote high-throughput phenotyping.}, journal = {Journal of visualized experiments : JoVE}, year = {2011}, month = {2011}, abstract = {

The mouse eye is an important genetic model for the translational study of human ophthalmic disease. Blinding diseases in humans, such as macular degeneration, photoreceptor degeneration, cataract, glaucoma, retinoblastoma, and diabetic retinopathy have been recapitulated in transgenic mice.(1-5) Most transgenic and knockout mice have been generated by laboratories to study non-ophthalmic diseases, but genetic conservation between organ systems suggests that many of the same genes may also play a role in ocular development and disease. Hence, these mice represent an important resource for discovering new genotype-phenotype correlations in the eye. Because these mice are scattered across the globe, it is difficult to acquire, maintain, and phenotype them in an efficient, cost-effective manner. Thus, most high-throughput ophthalmic phenotyping screens are restricted to a few locations that require on-site, ophthalmic expertise to examine eyes in live mice. (6-9) An alternative approach developed by our laboratory is a method for remote tissue-acquisition that can be used in large or small-scale surveys of transgenic mouse eyes. Standardized procedures for video-based surgical skill transfer, tissue fixation, and shipping allow any lab to collect whole eyes from mutant animals and send them for molecular and morphological phenotyping. In this video article, we present techniques to enucleate and transfer both unfixed and perfusion fixed mouse eyes for remote phenotyping analyses.

}, keywords = {Animals, Eye Enucleation, High-Throughput Screening Assays, Mice, Mice, Transgenic, Phenotype, Tissue Fixation}, author = {Mahajan, Vinit B and Skeie, Jessica M and Assefnia, Amir H and Mahajan, Maryann and Tsang, Stephen H} } @article {149, title = {Mutations in prickle orthologs cause seizures in flies, mice, and humans.}, journal = {American journal of human genetics}, volume = {88}, year = {2011}, month = {2011 Feb 11}, pages = {138-49}, abstract = {

Epilepsy is heritable, yet few causative gene mutations have been identified, and thus far no human epilepsy gene mutations have been found to produce seizures in invertebrates. Here we show that mutations in prickle genes are associated with seizures in humans, mice, and flies. We identified human epilepsy patients with heterozygous mutations in either PRICKLE1 or PRICKLE2. In overexpression assays in zebrafish, prickle mutations resulted in aberrant prickle function. A seizure phenotype was present in the Prickle1-null mutant mouse, two Prickle1 point mutant (missense and nonsense) mice, and a Prickle2-null mutant mouse. Drosophila with prickle mutations displayed seizures that were responsive to anti-epileptic medication, and homozygous mutant embryos showed neuronal defects. These results suggest that prickle mutations have caused seizures throughout evolution.

}, keywords = {Animals, Blotting, Western, Brain, Calcium, Carrier Proteins, DNA-Binding Proteins, Drosophila melanogaster, Drosophila Proteins, Embryo, Nonmammalian, Epilepsies, Myoclonic, Female, Heterozygote, Humans, Immunoenzyme Techniques, In Situ Hybridization, Male, Mice, Mice, Knockout, Mutation, Nerve Tissue Proteins, Phenotype, Reverse Transcriptase Polymerase Chain Reaction, RNA, Messenger, Seizures, Tumor Suppressor Proteins, Zebrafish, Zebrafish Proteins}, author = {Tao, Hirotaka and Manak, J Robert and Sowers, Levi and Mei, Xue and Kiyonari, Hiroshi and Abe, Takaya and Dahdaleh, Nader S and Yang, Tian and Wu, Shu and Chen, Shan and Fox, Mark H and Gurnett, Christina and Montine, Thomas and Bird, Thomas and Shaffer, Lisa G and Rosenfeld, Jill A and McConnell, Juliann and Madan-Khetarpal, Suneeta and Berry-Kravis, Elizabeth and Griesbach, Hilary and Saneto, Russell P and Scott, Matthew P and Antic, Dragana and Reed, Jordan and Boland, Riley and Ehaideb, Salleh N and El-Shanti, Hatem and Mahajan, Vinit B and Ferguson, Polly J and Axelrod, Jeffrey D and Lehesjoki, Anna-Elina and Fritzsch, Bernd and Slusarski, Diane C and Wemmie, John and Ueno, Naoto and Bassuk, Alexander G} } @article {151, title = {Seroreactivity against aqueous-soluble and detergent-soluble retinal proteins in posterior uveitis.}, journal = {Archives of ophthalmology}, volume = {129}, year = {2011}, month = {2011 Apr}, pages = {415-20}, abstract = {

To characterize the seroreactivity against retinal proteins in patients with posterior uveitis, retinal disease of noninflammatory origin, and healthy controls.

}, keywords = {Adolescent, Adult, Autoantibodies, Autoantigens, Blotting, Western, Electrophoresis, Polyacrylamide Gel, Eye Proteins, Female, Humans, Immunoglobulin A, Immunoglobulin G, Immunoglobulin M, Male, Middle Aged, Retina, Retinal Degeneration, Solubility, Uveitis, Posterior, Young Adult}, author = {Ko, Audrey C and Brinton, Jason P and Mahajan, Vinit B and Zimmerman, Bridget and Brinton, Gregory S and Stone, Edwin M and Folk, James C and Mullins, Robert F} } @article {153, title = {Sutureless triplanar sclerotomy for 23-gauge vitrectomy.}, journal = {Archives of ophthalmology}, volume = {129}, year = {2011}, month = {2011 May}, pages = {585-90}, abstract = {

To describe and test the intraoperative integrity of triplanar sclerotomies.

}, author = {Mahajan, Vinit B and Tarantola, Ryan M and Graff, Jordan M and Boldt, H Culver and Abr{\`a}moff, Michael D and Russell, Stephen R and Folk, James C} } @article {783, title = {Uveitis following intravitreal bevacizumab: a non-infectious cluster.}, journal = {Ophthalmic Surg Lasers Imaging}, volume = {42}, year = {2011}, month = {2011 Jul-Aug}, pages = {292-6}, abstract = {

BACKGROUND AND OBJECTIVE: In this retrospective case series, the authors report seven cases of bevacizumab-related uveitis that occurred within a 4-month period.

PATIENTS AND METHODS: Seven eyes of six patients developed non-infectious uveitis following bevacizumab intravitreal injections in a cohort of 978 consecutive bevacizumab injections.

RESULTS: The mean age of patients was 74.6 years (range: 26 to 92). All patients developed symptom onset within 1 day of injection. Shared signs and symptoms included corneal edema, anterior chamber and vitreous cell, conjunctival injection, ocular pain, and lack of hypopyon. In all patients, visual acuity returned to within one line of baseline acuity. All seven eyes had been previously injected with bevacizumab, with a mean number of antecedent injections of 6.1 (range: 3 to 12).

CONCLUSION: A cluster of sterile bevacizumab-related uveitic reactions was described in this case series. Acute onset of symptoms, absence of hypopyon, a predominant anterior segment reaction, and prompt improvement on topical steroid therapy are useful clinical features distinguishing this uveitic syndrome from infectious endophthalmitis.

}, keywords = {Adult, Aged, Aged, 80 and over, Angiogenesis Inhibitors, Antibodies, Monoclonal, Antibodies, Monoclonal, Humanized, Bevacizumab, Humans, Immunosuppressive Agents, Intravitreal Injections, Middle Aged, Retrospective Studies, Uveitis, Anterior, Vascular Endothelial Growth Factor A, Visual Acuity}, issn = {1938-2375}, doi = {10.3928/15428877-20110603-04}, author = {Kay, Christine N and Tarantola, Ryan M and Gehrs, Karen M and Folk, James C and Mahajan, Vinit B and Boldt, H Culver and Syed, Nasreen A and Russell, Stephen R} } @article {155, title = {Automated early detection of diabetic retinopathy.}, journal = {Ophthalmology}, volume = {117}, year = {2010}, month = {2010 Jun}, pages = {1147-54}, abstract = {

To compare the performance of automated diabetic retinopathy (DR) detection, using the algorithm that won the 2009 Retinopathy Online Challenge Competition in 2009, the Challenge2009, against that of the one currently used in EyeCheck, a large computer-aided early DR detection project.

}, keywords = {Aged, Algorithms, Area Under Curve, Diabetic Retinopathy, Diagnosis, Computer-Assisted, Diagnostic Techniques, Ophthalmological, Female, Humans, Male, Observer Variation, ROC Curve, Sensitivity and Specificity}, author = {Abr{\`a}moff, Michael D and Reinhardt, Joseph M and Russell, Stephen R and Folk, James C and Mahajan, Vinit B and Niemeijer, Meindert and Quellec, Gw{\'e}nol{\'e}} } @article {157, title = {Collagen XVIII mutation in Knobloch syndrome with acute lymphoblastic leukemia.}, journal = {American journal of medical genetics. Part A}, volume = {152A}, year = {2010}, month = {2010 Nov}, pages = {2875-9}, abstract = {

Knobloch syndrome (KNO) is caused by mutations in the collagen XVIII gene (COL18A1) and patients develop encephalocele and vitreoretinal degeneration. Here, we report an El Salvadorian family where two sisters showed features of KNO. One of the siblings also developed acute lymphoblastic leukemia. DNA sequencing of COL18A1 revealed a homozygous, 2-bp deletion (c3514-3515delCT) in exon 41, which leads to abnormal collagen XVIII and deficiency of its proteolytic cleavage product endostatin. KNO patients with mutations in COL18A1 may be at risk for endostatin-related conditions including malignancy.

}, keywords = {Base Sequence, Child, Child, Preschool, Collagen Type XVIII, DNA Mutational Analysis, Encephalocele, Eye Abnormalities, Family, Female, Humans, Infant, Magnetic Resonance Imaging, Male, Molecular Sequence Data, Mutation, Pedigree, Precursor Cell Lymphoblastic Leukemia-Lymphoma, Retinal Detachment}, author = {Mahajan, Vinit B and Olney, Ann Haskins and Garrett, Penny and Chary, Ajit and Dragan, Ecaterina and Lerner, Gary and Murray, Jeffrey and Bassuk, Alexander G} } @article {159, title = {Effects of vitrectomy on age-related macular degeneration.}, journal = {Ophthalmology}, volume = {117}, year = {2010}, month = {2010 Jul}, pages = {1381-6}, abstract = {

To determine whether vitrectomy alters the long-term progression of age-related macular degeneration (AMD).

}, keywords = {Aged, Aged, 80 and over, Case-Control Studies, Choroidal Neovascularization, Disease Progression, Epiretinal Membrane, Female, Follow-Up Studies, Geographic Atrophy, Humans, Macular Degeneration, Male, Middle Aged, Pilot Projects, Retinal Perforations, Retrospective Studies, Visual Acuity, Vitrectomy}, author = {Roller, A Brock and Mahajan, Vinit B and Boldt, H Culver and Abr{\`a}moff, Michael D and Russell, Stephen R and Folk, James C} } @article {161, title = {Intravitreal bevacizumab during pregnancy.}, journal = {Retina (Philadelphia, Pa.)}, volume = {30}, year = {2010}, month = {2010 Oct}, pages = {1405-11}, abstract = {

To report the clinical course of four women treated with intravitreal bevacizumab during pregnancy.

}, keywords = {Adult, Angiogenesis Inhibitors, Antibodies, Monoclonal, Choroidal Neovascularization, Eye Infections, Fungal, Female, Follow-Up Studies, Gestational Age, Histoplasmosis, Humans, Intravitreal Injections, Off-Label Use, Pregnancy, Pregnancy Complications, Sarcoidosis, Tomography, Optical Coherence, Uveitis, Vascular Endothelial Growth Factor A, Visual Acuity}, author = {Tarantola, Ryan M and Folk, James C and Boldt, H Culver and Mahajan, Vinit B} } @article {163, title = {Patients with an acute zonal occult outer retinopathy-like illness rapidly improve with valacyclovir treatment.}, journal = {American journal of ophthalmology}, volume = {150}, year = {2010}, month = {2010 Oct}, pages = {511-8}, abstract = {

To describe 3 cases of an acute zonal occult outer retinopathy-like illness responsive to valacyclovir hydrochloride.

}, keywords = {Acute Disease, Acyclovir, Adolescent, Adult, Antiviral Agents, Electroretinography, Eye Infections, Viral, Female, Herpesviridae Infections, Humans, Male, Retinal Diseases, Retrospective Studies, Scotoma, Tomography, Optical Coherence, Valine, Visual Field Tests, Visual Fields}, author = {Mahajan, Vinit B and Stone, Edwin M} } @article {165, title = {T-cell infiltration in autosomal dominant neovascular inflammatory vitreoretinopathy.}, journal = {Molecular vision}, volume = {16}, year = {2010}, month = {2010}, pages = {1034-40}, abstract = {

Autosomal dominant neovascular inflammatory vitreoretinopathy (ADNIV) is a familial blinding disease of unknown pathophysiology. The eyes and sera from patients with ADNIV were studied to understand the immune response in this condition.

}, keywords = {Aged, 80 and over, Antigens, CD4, Antigens, CD8, Autoantibodies, B-Lymphocytes, Eye Diseases, Female, Genes, Dominant, Humans, Immunoglobulin G, Immunologic Techniques, Neovascularization, Pathologic, Retina, Retinal Diseases, Staining and Labeling, T-Lymphocytes, Vitreous Body}, author = {Mahajan, Vinit B and Vallone, John G and Lin, Jonathan H and Mullins, Robert F and Ko, Audrey C and Folk, James C and Stone, Edwin M} } @article {167, title = {Erythropoetin receptor expression in the human diabetic retina.}, journal = {BMC research notes}, volume = {2}, year = {2009}, month = {2009}, pages = {234}, abstract = {

Recent evidence suggests erythropoietin (EPO) and the erythropoietin receptor (EPOR) may play a direct role in the pathogenesis of diabetic retinopathy. Better characterization of the EPO-EPOR signaling system in the ischemic retina may offer a new therapeutic modality for ischemic ophthalmic diseases. This study was performed to identify EPOR mRNA expression in the human diabetic eye.

}, author = {Shah, Shaival S and Tsang, Stephen H and Mahajan, Vinit B} } @article {169, title = {A head-tilt test for hypopyon after intravitreal triamcinolone.}, journal = {Retina (Philadelphia, Pa.)}, volume = {29}, year = {2009}, month = {2009 Apr}, pages = {560-1}, keywords = {Adult, Anterior Chamber, Diagnosis, Differential, Diagnostic Techniques, Ophthalmological, Endophthalmitis, Eye Infections, Female, Glucocorticoids, Head, Humans, Inflammation, Injections, Posture, Triamcinolone Acetonide, Vitreous Body}, author = {Mahajan, Vinit B and Folk, James C and Boldt, H Culver} } @article {171, title = {Management of sympathetic ophthalmia with the fluocinolone acetonide implant.}, journal = {Ophthalmology}, volume = {116}, year = {2009}, month = {2009 Mar}, pages = {552-557.e1}, abstract = {

We examined whether implantation of the fluocinolone acetonide (Retisert) implant achieved control of inflammation and a reduced need for oral corticosteroids or immunosuppressives in patients with sympathetic ophthalmia (SO).

}, keywords = {Adult, Aged, Drug Implants, Female, Fluocinolone Acetonide, Follow-Up Studies, Glucocorticoids, Humans, Immunosuppressive Agents, Intraocular Pressure, Male, Middle Aged, Ophthalmia, Sympathetic, Retrospective Studies, Treatment Outcome, Visual Acuity}, author = {Mahajan, Vinit B and Gehrs, Karen M and Goldstein, Debra A and Fischer, David H and Lopez, Juan S and Folk, James C} } @article {173, title = {A new macular dystrophy with anomalous vascular development, pigment spots, cystic spaces, and neovascularization.}, journal = {Archives of ophthalmology}, volume = {127}, year = {2009}, month = {2009 Nov}, pages = {1449-57}, abstract = {

To clinically phenotype an inherited macular dystrophy with peculiar intraretinal pigment spots, cysts, and hemorrhage in a 24-year-old female proband and her family.

}, keywords = {Adolescent, Adult, Amblyopia, Child, Child, Preschool, Cysts, Electroretinography, Female, Fluorescein Angiography, Humans, Macular Degeneration, Male, Middle Aged, Pedigree, Phenotype, Retinal Hemorrhage, Retinal Neovascularization, Retinal Pigment Epithelium, Retinal Vessels, Strabismus, Tomography, Optical Coherence, Visual Acuity, Young Adult}, author = {Mahajan, Vinit B and Russell, Stephen R and Stone, Edwin M} } @article {175, title = {Estrogen receptor alpha and matrix metalloproteinase 2 polymorphisms and age-related maculopathy in older women.}, journal = {American journal of epidemiology}, volume = {167}, year = {2008}, month = {2008 May 15}, pages = {1217-25}, abstract = {

In this study, the authors sought to determine whether single nucleotide polymorphisms in the estrogen receptor alpha (ESR1) and matrix metalloproteinase 2 (MMP2) genes are associated with age-related maculopathy (ARM) in older women. Subjects comprised a random sample of Caucasian women aged \> or =74 years participating in the Study of Osteoporotic Fractures year 10 follow-up (n = 906) in 1997-1998. Fundus photographs were graded for ARM using a modification of the Wisconsin Age-Related Maculopathy Grading System. The prevalences of early ARM and late ARM were 46\% and 4\%, respectively. The MMP2 rs2287074 single nucleotide polymorphism (G--\>A) was associated with ARM. The A allele was present in 47\%, 43\%, and 30\% of subjects with no, early, and late ARM, respectively (p = 0.01), and was associated with lower odds of any ARM (for AG vs. GG, odds ratio = 0.80, 95\% confidence interval: 0.65, 0.99; for AA vs. GG, odds ratio = 0.64, 95\% confidence interval: 0.42, 0.98). An interaction with use of postmenopausal hormone therapy was significant (p = 0.02). The MMP2 rs2287074 A allele may be associated with a lower likelihood of ARM in older Caucasian women, particularly those who have never used hormone therapy. The role of MMP2 rs2287074 in ARM should be further elucidated.

}, keywords = {Aged, Aged, 80 and over, Confounding Factors (Epidemiology), Estrogen Receptor alpha, Estrogen Replacement Therapy, Female, Gene Frequency, Genetic Linkage, Genotype, Humans, Logistic Models, Macular Degeneration, Matrix Metalloproteinase 2, Osteoporosis, Postmenopausal, Pigment Epithelium of Eye, Polymerase Chain Reaction, Polymorphism, Single Nucleotide, Severity of Illness Index}, author = {Seitzman, Robin L and Mahajan, Vinit B and Mangione, Carol and Cauley, Jane A and Ensrud, Kristine E and Stone, Katie L and Cummings, Steven R and Hochberg, Marc C and Hillier, Teresa A and Sinsheimer, Janet S and Yu, Fei and Coleman, Anne L} } @article {177, title = {Transgenic mice carrying the H258N mutation in the gene encoding the beta-subunit of phosphodiesterase-6 (PDE6B) provide a model for human congenital stationary night blindness.}, journal = {Human mutation}, volume = {28}, year = {2007}, month = {2007 Mar}, pages = {243-54}, abstract = {

Mutations in the beta-subunit of cGMP-phosphodiesterase (PDE6beta) can lead to either progressive retinal disease, such as human retinitis pigmentosa (RP), or stationary disease, such as congenital stationary night blindness (CSNB). Individuals with CSNB in the Rambusch pedigree were found to carry the H258N allele of PDE6B (MIM$\#$ 180072); a similar mutation was not found in RP patients. This report describes an individual carrying the H258N allele, who presented with generalized retinal dysfunction affecting the rod system and a locus of dysfunction at the rod-bipolar interface. Also described are preclinical studies in which transgenic mice with the H258N allele were generated to study the pathophysiological mechanisms of CSNB. While Pde6b(rd1)/Pde6b(rd1) mice have severe photoreceptor degeneration, as in human RP, the H258N transgene rescued these cells. The cGMP-PDE6 activity of dark-adapted H258N mice showed an approximate three-fold increase in the rate of retinal cGMP hydrolysis: from 130.1 nmol x min(-1) x nmol(-1) rhodopsin in wild-type controls to 319.2 nmol x min(-1) x nmol(-1) rhodopsin in mutants, consistent with the hypothesis that inhibition of the PDE6beta activity by the regulatory PDE6gamma subunit is blocked by this mutation. In the albino (B6CBA x FVB) F2 hybrid background, electroretinograms (ERG) from H258N mice were similar to those obtained from affected Rambusch family members, as well as humans with the most common form of CSNB (X-linked), demonstrating a selective loss of the b-wave with relatively normal a-waves. When the H258N allele was introduced into the DBA background, there was no evidence of selective reduction in b-wave amplitudes; rather a- and b-wave amplitudes were both reduced. Thus, factors other than the PDE6B mutation itself could contribute to the variance of an electrophysiological response. Therefore, caution is advisable when interpreting physiological phenotypes associated with the same allele on different genetic backgrounds. Nevertheless, such animals should be of considerable value in further studies of the molecular pathology of CSNB.

}, keywords = {Adult, Animals, Cyclic Nucleotide Phosphodiesterases, Type 6, Disease Models, Animal, DNA Mutational Analysis, Electroretinography, Female, Humans, Male, Mice, Mice, Inbred DBA, Mice, Transgenic, Mutation, Night Blindness, Phosphoric Diester Hydrolases, Retinal Degeneration, Transgenes}, author = {Tsang, Stephen H and Woodruff, Michael L and Jun, Lin and Mahajan, Vinit and Yamashita, Clyde K and Pedersen, Robert and Lin, Chyuan-Sheng and Goff, Stephen P and Rosenberg, Thomas and Larsen, Michael and Farber, Debora B and Nusinowitz, Steven} } @article {823, title = {Tissue-specific gene expression of head and neck squamous cell carcinoma in vivo by complementary DNA microarray analysis.}, journal = {Arch Otolaryngol Head Neck Surg}, volume = {129}, year = {2003}, month = {2003 Jul}, pages = {760-70}, abstract = {

OBJECTIVES: To identify distinct gene expression profiles of human head and neck squamous cell carcinomas (HNSCCAs) using complementary DNA (cDNA) microarray analysis and to create a preliminary, comprehensive database of HNSCCA gene expression.

PATIENTS AND METHODS: Nine patients with histologically confirmed HNSCCAs, staged according to the American Joint Committee on Cancer, were enrolled. The HNSCCA tumor tissue and normal mucosal tissue were harvested at the time of surgery. A cDNA library was constructed from the paired fresh-frozen human surgical specimens of HNSCCAs and nonmalignant epithelial tissues. Biotinylated RNA was transcribed from the cDNA library and hybridized to high-density microarrays containing approximately 12 000 human genes. Altered gene expression of HNSCCAs was identified by comparison to corresponding normal mucosal tissues after a bayesian statistical analysis of variance. Results were analyzed using the gene database of the National Institutes of Health. Hierarchical clustering of the genomic data sets was determined by similarity metrics based on Pearson correlation.

RESULTS: Hierarchical clustering analysis revealed that the gene expression profiles obtained from the nonselected panel of 12 000 genes could distinguish the tumors from nonmalignant tissues. Gene expression changes were reproducibly observed in 227 genes representing previously identified chemokines, tumor suppressors, differentiation markers, matrix molecules, membrane receptors, and transcription factors that correlated with neoplasia, including 46 previously uncharacterized genes. Moreover, significant expression of the collagen type XI alpha1 gene and a novel gene was reproducibly observed in all 9 tumors, whereas these genes were virtually undetectable in their corresponding, adjacent nonmalignant tissues.

CONCLUSIONS: Complementary DNA microarray analysis of human HNSCCAs has produced a preliminary, comprehensive database of tumor-specific gene expression profiles and provided important insights into modeling gene expression changes implicated in carcinogenesis. A large-scale analysis of gene expression carries the future potential of identifying sensitive molecular markers for early tumor detection, prognosis, and novel targets for interceptive therapeutics.

}, keywords = {Bayes Theorem, Carcinoma, Squamous Cell, DNA, Complementary, Gene Expression Profiling, Gene Expression Regulation, Neoplastic, Head and Neck Neoplasms, Humans, Hypopharyngeal Neoplasms, Laryngeal Neoplasms, Maxillary Neoplasms, Mouth Neoplasms, Oligonucleotide Array Sequence Analysis}, issn = {0886-4470}, doi = {10.1001/archotol.129.7.760}, author = {Sok, John C and Kuriakose, M Abraham and Mahajan, Vinit B and Pearlman, Aaron N and DeLacure, Mark D and Chen, Fang-An} } @article {181, title = {Microarray analysis of corneal fibroblast gene expression after interleukin-1 treatment.}, journal = {Investigative ophthalmology \& visual science}, volume = {43}, year = {2002}, month = {2002 Jul}, pages = {2143-51}, abstract = {

To identify changes in gene expression in human corneal fibroblasts after exposure to interleukin-1alpha.

}, keywords = {Cells, Cultured, Computational Biology, Cornea, Eye Proteins, Fibroblasts, Gene Expression, Gene Expression Profiling, Humans, Interleukin-1, Oligonucleotide Array Sequence Analysis, RNA}, author = {Mahajan, Vinit B and Wei, Cui and McDonnell, Peter J} } @article {827, title = {Thrombin receptor signaling to cytoskeleton requires Hsp90.}, journal = {J Biol Chem}, volume = {276}, year = {2001}, month = {2001 Aug 31}, pages = {32642-7}, abstract = {

Thrombin is a serine protease that evokes various cellular responses involved in injury and repair of the nervous system through the activation of protease-activated receptor-1 (PAR-1). Signals that modulate cell morphology precede most PAR-1 effects, but the initial signal transduction molecules are not known. Using the yeast two-hybrid system, we identified Hsp90, a chaperone with known signaling properties, as a binding partner of PAR-1. The interaction was confirmed by glutathione S-transferase pull-down, overlay, and co-immunoprecipitation assays. Morphological assays in mouse astrocytes were carried out to evaluate the importance of Hsp90 during cytoskeletal signaling. Reducing Hsp90 levels by antisense treatment or disruption of the Hsp90.PAR-1 complex by the Hsp90-specific drug geldanamycin attenuated thrombin-mediated astrocyte shape changes. Furthermore, overexpression of the PAR-1 cytoplasmic tail abrogated thrombin-induced cytoskeletal changes in neuronal cells. Treatment with geldanamycin specifically inhibited activation of RhoA without affecting thrombin-mediated intracellular calcium release, revealing the regulation of a distinct signaling pathway by Hsp90. Taken together, these studies demonstrate that Hsp90 may be essential for PAR-1-mediated signaling to the cytoskeleton.

}, keywords = {Animals, Animals, Newborn, Astrocytes, Cells, Cultured, Cerebral Cortex, Cloning, Molecular, Cytoskeleton, HSP90 Heat-Shock Proteins, Humans, Neurons, Oligodeoxyribonucleotides, Antisense, Rats, Rats, Sprague-Dawley, Receptor, PAR-1, Receptors, Thrombin, Recombinant Fusion Proteins, rhoA GTP-Binding Protein, Saccharomyces cerevisiae, Signal Transduction, Thrombin}, issn = {0021-9258}, doi = {10.1074/jbc.M104212200}, author = {Pai, K S and Mahajan, V B and Lau, A and Cunningham, D D} } @article {185, title = {Creatine kinase, an ATP-generating enzyme, is required for thrombin receptor signaling to the cytoskeleton.}, journal = {Proceedings of the National Academy of Sciences of the United States of America}, volume = {97}, year = {2000}, month = {2000 Oct 24}, pages = {12062-7}, abstract = {

Thrombin orchestrates cellular events after injury to the vascular system and extravasation of blood into surrounding tissues. The pathophysiological response to thrombin is mediated by protease-activated receptor-1 (PAR-1), a seven-transmembrane G protein-coupled receptor expressed in the nervous system that is identical to the thrombin receptor in platelets, fibroblasts, and endothelial cells. Once activated by thrombin, PAR-1 induces rapid and dramatic changes in cell morphology, notably the retraction of growth cones, axons, and dendrites in neurons and processes in astrocytes. The signal is conveyed by a series of localized ATP-dependent reactions directed to the actin cytoskeleton. How cells meet the dynamic and localized energy demands during signal transmission is unknown. Using the yeast two-hybrid system, we identified an interaction between PAR-1 cytoplasmic tail and the brain isoform of creatine kinase, a key ATP-generating enzyme that regulates ATP within subcellular compartments. The interaction was confirmed in vitro and in vivo. Reducing creatine kinase levels or its ATP-generating potential inhibited PAR-1-mediated cellular shape changes as well as a PAR-1 signaling pathway involving the activation of RhoA, a small G protein that relays signals to the cytoskeleton. Thrombin-stimulated intracellular calcium release was not affected. Our results suggest that creatine kinase is bound to PAR-1 where it may be poised to provide bursts of site-specific high-energy phosphate necessary for efficient receptor signal transduction during cytoskeletal reorganization.

}, keywords = {Adenosine Triphosphate, Animals, Base Sequence, Calcium, Creatine Kinase, Cytoskeleton, Oligonucleotides, Antisense, Rats, Receptor, PAR-1, Receptors, Thrombin, Signal Transduction, Two-Hybrid System Techniques}, author = {Mahajan, V B and Pai, K S and Lau, A and Cunningham, D D} } @article {831, title = {Connectin: a homophilic cell adhesion molecule expressed on a subset of muscles and the motoneurons that innervate them in Drosophila.}, journal = {Cell}, volume = {70}, year = {1992}, month = {1992 Aug 21}, pages = {553-67}, abstract = {

Each abdominal hemisegment in the Drosophila embryo contains a stereotyped array of 30 muscles, each specifically innervated by one or a few motoneurons. We screened 11,000 enhancer trap lines, isolated several expressing beta-galactosidase in small subsets of muscle fibers prior to innervation, and identified two of these as inserts in connectin and Toll, members of the leucine-rich repeat gene family. Connectin contains a signal sequence, ten leucine-rich repeats, and a putative phosphatidylinositol membrane linkage; in S2 cells, connectin can mediate homophilic cell adhesion. Connectin is expressed on the surface of eight muscles, the motoneurons that innervate them, and several glial cells along the pathways leading to them. During synapse formation, the protein localizes to synaptic sites; afterward, it largely disappears. Thus, connectin is a novel cell adhesion molecule whose expression suggests a role in target recognition.

}, keywords = {Amino Acid Sequence, Animals, Base Sequence, Cell Adhesion Molecules, Cloning, Molecular, Connectin, DNA, Drosophila, Molecular Sequence Data, Motor Neurons, Muscle Proteins, Muscles, Protein Kinases, Sequence Alignment}, issn = {0092-8674}, author = {Nose, A and Mahajan, V B and Goodman, C S} }