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Drug Design Lab

Virtual Drug Design

Drug design refers to the inventive process of creating new compounds and medications based on our knowledge of a biological target. Often, this biological target is a protein that may be inhibited to provide a therapeutic effect. A detailed understanding of a protein’s structure and function is often required in the design of novel inhibitors. The Mahajan laboratory utilizes virtual, or computer-aided, drug design methods to model new compounds that are complementary to a target protein’s shape and charge. These virtually-designed lead-like compounds are then synthesized in collaboration with Stanford’s Medicinal Chemistry Knowledge Center (MCKC) for biochemical and cellular testing.

 

Drug Repositioning

The development of new drugs can cost upward of a billion dollars and take over a decade before the drug reaches the market. Drug repositioning makes use of existing drugs for the treatment of diseases where there are few therapeutic options. This approach can provide a safer alternative to the development of new compounds, since repurposed drugs are already FDA-approved, have proven bio-availabilities, and well-characterized side-effect profiles. To identify which drugs to reposition, our laboratory performs proteomic analyses of liquid biopsies (e.g. vitreous or aqueous humor) from diseased patients to identify drug targets and biomarkers. This approach allows for rapid, real-time repositioning of available drugs to patients with few therapeutic options. 

Projects

Structure-based drug design for inherited eye diseases.
Identifying available drugs to treat patients with rare diseases using proteomics.

News

Apr 20 2020 | Posted In: 20/20 Blog
Palo Alto, CA — Is there something to feed retinal cells that can give them the energy to withstand gene mutations that make them sick?
Mar 3 2020 | Posted In: 20/20 Blog
Dylan Parsons, a postdoctoral fellow in the Mahajan Lab, was one of three candidates selected to receive an award from the Stanford T32 Vision Training Grant. The grant provides one year of funding for intensive bench to bedside translational research aimed at bringing new therapies to patients.
Dec 4 2019 | Posted In: 20/20 Blog
Palo Alto, CA — Research from the Mahajan lab was featured on the cover of Human Mutation'sDecember 2019 issue, highlighting their manuscript, “CAPN5 genetic inactivation phenotype supports therapeutic inhibition trials.” 
Oct 31 2019 | Posted In: 20/20 Blog
Palo Alto, CA —The ability to obtain high resolution crystal structures of proteins has shifted drug design into a new age. Computationally aided drug design is being increasingly used to expedite and simplify the drug discovery process.
Oct 30 2019 | Posted In: 20/20 Blog
Santa Cruz, CA — Members of the Mahajan Lab attended Stanford’s Department of Structural Biology Scientific Retreat held in Santa Cruz at the Chaminade Resort.